View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10106_low_13 (Length: 240)

Name: NF10106_low_13
Description: NF10106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10106_low_13
NF10106_low_13
[»] chr6 (3 HSPs)
chr6 (1-84)||(22856562-22856645)
chr6 (112-216)||(33077652-33077756)
chr6 (112-216)||(22856430-22856534)
[»] chr4 (1 HSPs)
chr4 (112-216)||(23864653-23864757)
[»] chr2 (1 HSPs)
chr2 (114-202)||(8872493-8872581)
[»] chr7 (2 HSPs)
chr7 (114-213)||(43014660-43014759)
chr7 (153-201)||(42031302-42031350)
[»] chr3 (1 HSPs)
chr3 (114-202)||(39902736-39902824)
[»] chr8 (1 HSPs)
chr8 (154-198)||(22631406-22631450)


Alignment Details
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 22856645 - 22856562
Alignment:
Q  1 agaggaatatattagcatgttgctggaagaagaagaagaagcaacaaagtttggttgggggccgttggggttccttgtctctat 84  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22856645 agaggaatatattagcatgttgttgaaagaagaagaagaagcaacaaagtttggttgggggccgttggggttccttgtctctat 22856562  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 112 - 216
Target Start/End: Complemental strand, 33077756 - 33077652
Alignment:
Q  112 gcataattgttttttaatagtctggtggggtcagnnnnnnngttacacaatagccaacagaaagtttcaaaccattatcaggtaatagatccaagccatc 211  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||    
T  33077756 gcataattgttttttaatagtctggtggggtcagtttttttgttacacaatagccaacaaaaagtttcaaaccattatgaggtaatagatccaaaccatc 33077657  T
Q  212 cacat 216  Q
    |||||    
T  33077656 cacat 33077652  T

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Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 216
Target Start/End: Complemental strand, 22856534 - 22856430
Alignment:
Q  112 gcataattgttttttaatagtctggtggggtcagnnnnnnngttacacaatagccaacagaaagtttcaaaccattatcaggtaatagatccaagccatc 211  Q
    |||||||||||||||||||||||||||| |||||       |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||    
T  22856534 gcataattgttttttaatagtctggtggagtcagtttttttgttacacaatagccaacaaaaagtttcaaaccattatcaggtaaaagatccaagtcatc 22856435  T
Q  212 cacat 216  Q
    |||||    
T  22856434 cacat 22856430  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 216
Target Start/End: Complemental strand, 23864757 - 23864653
Alignment:
Q  112 gcataattgttttttaatagtctggtggggtcagnnnnnnngttacacaatagccaacagaaagtttcaaaccattatcaggtaatagatccaagccatc 211  Q
    ||||||||||||||||||||||||||| ||||||       |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  23864757 gcataattgttttttaatagtctggtgaggtcagtttttttgttacacaatagccaacaaaaagttttaaaccattatcgggtaatagatccaagccatc 23864658  T
Q  212 cacat 216  Q
    |||||    
T  23864657 cacat 23864653  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 8872581 - 8872493
Alignment:
Q  114 ataattgttttttaatagtctggtggggtcagnnnnnnngttacacaatagccaacagaaagtttcaaaccattatcaggtaatagatc 202  Q
    ||||||||||||||||||| ||||||||||||       |||||||||||||||||| ||||| ||||||||||| ||||||| |||||    
T  8872581 ataattgttttttaatagtttggtggggtcaggttttttgttacacaatagccaacaaaaagtatcaaaccattaccaggtaacagatc 8872493  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 43014759 - 43014660
Alignment:
Q  114 ataattgttttttaatagtctggtggggtcagnnnnnnngttacacaatagccaacagaaagtttcaaaccattatcaggtaatagatccaagccatcca 213  Q
    ||||||||||||||||||| ||||||||||||       ||||| |||||||||||| ||||||||||||||||| || |||| |||||  |||||||||    
T  43014759 ataattgttttttaatagtttggtggggtcagcttttttgttacccaatagccaacaaaaagtttcaaaccattaccaagtaacagatctgagccatcca 43014660  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 42031302 - 42031350
Alignment:
Q  153 gttacacaatagccaacagaaagtttcaaaccattatcaggtaatagat 201  Q
    ||||||||||| ||| || |||||||||||||||||| |||||| ||||    
T  42031302 gttacacaataaccatcaaaaagtttcaaaccattataaggtaacagat 42031350  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 39902736 - 39902824
Alignment:
Q  114 ataattgttttttaatagtctggtggggtcagnnnnnnngttacacaatagccaacagaaagtttcaaaccattatcaggtaatagatc 202  Q
    ||||||||||||||||||| || |||||| ||       |||||||||||||||||| ||||| ||||||||||| ||||||| |||||    
T  39902736 ataattgttttttaatagtttgatggggtaaggttttttgttacacaatagccaacaaaaagtatcaaaccattaccaggtaacagatc 39902824  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 22631450 - 22631406
Alignment:
Q  154 ttacacaatagccaacagaaagtttcaaaccattatcaggtaata 198  Q
    ||||||||||| ||||| ||||||||||||||||| ||| |||||    
T  22631450 ttacacaatagacaacaaaaagtttcaaaccattaacagataata 22631406  T

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