View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10106_low_5 (Length: 346)
Name: NF10106_low_5
Description: NF10106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10106_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 32196234 - 32196556
Alignment:
| Q |
18 |
caaatgacctattaattgatttccattcaagagcctacaaaaagtttatttcatgagaaatatagtagaaacaatgttatcatttgatacacaacgattt |
117 |
Q |
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| T |
32196234 |
caaatgacctattaattgatttccattcaagagcctacaaaaaatctacttaatgagaaatagtgtagaaacactgttatgattagatgcgcaacgattt |
32196333 |
T |
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| Q |
118 |
tgtctatgtagtaatatgtgtaacactactgaaaaattg---taccgacaaaaatttgagacg-aaaagagtataatacatttctagttttagtgtctct |
213 |
Q |
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| T |
32196334 |
tgttgatgtactaatatgtgtaacactactgaaaaattgaagtaccgacaaaaatttgagatggaaaaaaatataatacatttctagtcttagtgtctct |
32196433 |
T |
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| Q |
214 |
aatatttagcgatgaaattagatcgcgtagagggatctcaacttacaagagttttaaagttttgatcttgccgatttcctttggaatattcccagttatg |
313 |
Q |
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| T |
32196434 |
aatatttagcgatgaaattagatcgcgaggagggatttaaacttacaagagttttaaagttttgatcttgccgatttcctttggaatattcccagttatg |
32196533 |
T |
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| Q |
314 |
ttgttccacataaagtccctttg |
336 |
Q |
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| T |
32196534 |
ttgttccacataaagtccctttg |
32196556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 254 - 334
Target Start/End: Complemental strand, 28284932 - 28284852
Alignment:
| Q |
254 |
acttacaagagttttaaagttttgatcttgccgatttcctttggaatattcccagttatgttgttccacataaagtccctt |
334 |
Q |
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| T |
28284932 |
acttacaagaggaataacgatttgatattgccaatttcctttggaatactcccagttattttgttccacatgaagttcctt |
28284852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 335
Target Start/End: Complemental strand, 28268661 - 28268576
Alignment:
| Q |
250 |
ctcaacttacaagagttttaaagttttgatcttgccgatttcctttggaatattcccagttatgttgttccacataaagtcccttt |
335 |
Q |
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| T |
28268661 |
ctcaacttacaagagttccaaagttttgatattgccaatttccacaggaattgtcccacttatattgttccacatgaaatcccttt |
28268576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 28285197 - 28285161
Alignment:
| Q |
24 |
acctattaattgatttccattcaagagcctacaaaaa |
60 |
Q |
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| T |
28285197 |
acctgttaattgatttccattcaggagcctacaaaaa |
28285161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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