View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10106_low_6 (Length: 346)
Name: NF10106_low_6
Description: NF10106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10106_low_6 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 20051800 - 20052134
Alignment:
| Q |
1 |
acacttgaaccacttttaaccttggcttccttccaagcagcaccataaccagttgaaaacccacatgagatgaaacttgcataagctcgattaatggttg |
100 |
Q |
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| T |
20051800 |
acacttgaaccacttttaaccttggcttccttccaagcagcaccataaccagttgaaaacccacatgagatgaaacttgcataagctagattaatggttg |
20051899 |
T |
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| Q |
101 |
gatcgactttgagaaggtagttgacatcaacaacaacatactccgaccatgtagcacaactcaaaacatgatatagtctttggcctcgaacggacaatct |
200 |
Q |
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| T |
20051900 |
gatcgactttgagaaggtagttgacatcaacaacgacatactccgaccatgtagcacaactcaaaacatgatatagtctttggcctcgaacggacaatct |
20051999 |
T |
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| Q |
201 |
tgaagtgttatcgggcattagaccggtgaatctcacagggtatgtaagacaaagattggtttttcttgaaacacaattcacacattcttgacactcccct |
300 |
Q |
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| T |
20052000 |
tgaagtgttatcgggcattagaccggtgaatctcacagggtatgtaagacaaagattggtttttcttgaaacacaattcacacattcttgacactcccct |
20052099 |
T |
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| Q |
301 |
acatatgttggaattataatatcaccttctttcat |
335 |
Q |
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| T |
20052100 |
acatatgttggaattataatatcaccttctttcat |
20052134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 5 - 332
Target Start/End: Original strand, 505910 - 506237
Alignment:
| Q |
5 |
ttgaaccacttttaaccttggcttccttccaagcagcaccataaccagttgaaaacccacatgagatgaaacttgcataagctcgattaatggttggatc |
104 |
Q |
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| T |
505910 |
ttgaaccactttcaatattggcttctttccaacaagctccataaccagttgaaaacccacatgagatgaaactagcataagctagattaatgtttggatc |
506009 |
T |
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| Q |
105 |
gactttgagaaggtagttgacatcaacaacaacatactccgaccatgtagcacaactcaaaacatgatatagtctttggcctcgaacggacaatcttgaa |
204 |
Q |
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||| | |||||||| |||| |||||| || ||||| |||||||||| |||||||||||||||||| |||| | |||||||||| || ||||| |||||| |
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| T |
506010 |
aactctaagaaggtaattgatatcaaccaccacatattccgaccatgaagcacaactcaaaacatggtataatgtttggcctcggacagacaaccttgaa |
506109 |
T |
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| Q |
205 |
gtgttatcgggcattagaccggtgaatctcacagggtatgtaagacaaagattggtttttcttgaaacacaattcacacattcttgacactcccctacat |
304 |
Q |
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| T |
506110 |
gtgttatctggcattagaccagtcaatctcacaggatgtgtcaaacacaaattggttttcccagaaacacaattctcacattcttcacactcgcctatgt |
506209 |
T |
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| Q |
305 |
atgttggaattataatatcaccttcttt |
332 |
Q |
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| T |
506210 |
atgttggaattatgaaatccccttcttt |
506237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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