View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10106_low_8 (Length: 290)

Name: NF10106_low_8
Description: NF10106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10106_low_8
NF10106_low_8
[»] chr3 (5 HSPs)
chr3 (10-184)||(7850646-7850820)
chr3 (22-137)||(20000477-20000590)
chr3 (188-242)||(7850529-7850583)
chr3 (16-177)||(13411044-13411205)
chr3 (78-178)||(8820569-8820669)
[»] chr4 (2 HSPs)
chr4 (16-147)||(44078727-44078858)
chr4 (16-134)||(40286990-40287109)
[»] chr6 (3 HSPs)
chr6 (16-177)||(22748919-22749080)
chr6 (13-131)||(34220163-34220281)
chr6 (16-147)||(28549792-28549923)
[»] chr2 (4 HSPs)
chr2 (45-137)||(3470659-3470749)
chr2 (45-137)||(42494058-42494151)
chr2 (185-227)||(13968990-13969032)
chr2 (185-229)||(4108903-4108947)
[»] chr1 (3 HSPs)
chr1 (13-164)||(3400385-3400534)
chr1 (43-178)||(13117194-13117330)
chr1 (16-152)||(27121177-27121313)
[»] chr7 (1 HSPs)
chr7 (32-178)||(18573546-18573690)
[»] scaffold0001 (1 HSPs)
scaffold0001 (13-119)||(509918-510024)
[»] chr8 (1 HSPs)
chr8 (16-79)||(33933175-33933238)
[»] chr5 (2 HSPs)
chr5 (58-134)||(25698982-25699058)
chr5 (54-97)||(5538788-5538831)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 7850820 - 7850646
Alignment:
Q  10 gcaaaggaaacatgatcaacttcacgcacctagtacagatgagtcatatggacctcagagggttaatgggtctggacatcaaaagaaagacccgttagat 109  Q
    |||||||||||||||||  || |||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  7850820 gcaaaggaaacatgatcggctccacgcgtctagtacagatgagtcatatggacctcagagggttaatgggtctggacataaaaaaaaagacccgttagat 7850721  T
Q  110 caagaaagtgttgcctataaaaggagacgccgagagagtagtaaggagatcgaattctttatcttgaaccgtgta 184  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||    
T  7850720 caagaaagtgttgcctataaaaggagacaacgaaagagtagtaaggagatcgaattctttatcttgaaccgtgta 7850646  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 20000477 - 20000590
Alignment:
Q  22 tgatcaacttcacgcacctagtacagatgagtcatatggacctcagagggttaatgggtctggacatcaaaagaaagacccgttagatcaagaaagtgtt 121  Q
    |||||| || ||||||||||||||| ||||| |||||||||||||   | ||||||||  || ||||| |||||||| ||| |||| ||||||||||| |    
T  20000477 tgatcagctccacgcacctagtacaaatgagccatatggacctcaa--gattaatgggcatgtacatccaaagaaaggcccattaggtcaagaaagtgat 20000574  T
Q  122 gcctataaaaggagac 137  Q
    ||||||||||||||||    
T  20000575 gcctataaaaggagac 20000590  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 7850583 - 7850529
Alignment:
Q  188 ctcacttattgtaattaacttgggtttacatacgtcaacaggacacatggtgaaa 242  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||| ||||    
T  7850583 ctcacttattgtaattaacttgagtttacatacgtcaacagaacacatggcgaaa 7850529  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 13411205 - 13411044
Alignment:
Q  16 gaaacatgatcaacttcacgcacctagtacagatgagtcatatggacctcagagggttaatgggtctggacatcaaaagaaagacccgttagatcaagaa 115  Q
    |||||||||| | || ||||  ||||||||| |||||  |||||| ||||||| |||||||||  ||| ||||| ||||||||||||  ||| |||||||    
T  13411205 gaaacatgattagctccacgatcctagtacatatgagctatatgggcctcagatggttaatggacctgaacatccaaagaaagaccc-ataggtcaagaa 13411107  T
Q  116 agtgttgcctataaaaggagacgccgagagagtagtaag-gagatcgaattctttatcttgaa 177  Q
    ||||  |||||||||||||||| || ||| || ||| || | |||||| ||| ||||||||||    
T  13411106 agtgaggcctataaaaggagacacctagaaagcagttagagggatcgagttcattatcttgaa 13411044  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 8820669 - 8820569
Alignment:
Q  78 ggtctggacatcaaaagaaagacccgttagatcaagaaagtgttgcctataaaaggagacgccgagagagtagtaaggagatcgaattctttatcttgaa 177  Q
    ||||| |||||| |||||||| ||| |||| | |||||||||   ||||||||||||||| || |||||| |||| ||| ||| ||||| ||||||||||    
T  8820669 ggtctagacatccaaagaaaggcccattaggtgaagaaagtgagacctataaaaggagacacctagagagcagtagggacatcaaattcattatcttgaa 8820570  T
Q  178 c 178  Q
    |    
T  8820569 c 8820569  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 44078858 - 44078727
Alignment:
Q  16 gaaacatgatcaacttcacgcacctagtacagatgagtcatatggacctcagagggttaatgggtctggacatcaaaagaaagacccgttagatcaagaa 115  Q
    |||||||||||||||||||||  || ||||  ||||| |||||||||||||||| ||||||||  ||| ||||| ||||| |||| | ||||||||||||    
T  44078858 gaaacatgatcaacttcacgcttctggtactaatgagccatatggacctcagagagttaatggacctgaacatccaaagagagactcattagatcaagaa 44078759  T
Q  116 agtgttgcctataaaaggagacgccgagagag 147  Q
    ||||  |||||||||||||||| || ||||||    
T  44078758 agtgaagcctataaaaggagacacctagagag 44078727  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 40287109 - 40286990
Alignment:
Q  16 gaaacatgatcaacttcacgcacctagtacagatgagtcatatggacctcagagggttaatgggtctggacat-caaaagaaagacccgttagatcaaga 114  Q
    |||||||||||| || ||| | ||| ||||||||||| |||||| | |||| |||||||||||||||| |||| ||||||| || ||| |||| ||||||    
T  40287109 gaaacatgatcagctgcacacgcctggtacagatgagccatatgaatctcaaagggttaatgggtctgaacatccaaaagagaggcccattaggtcaaga 40287010  T
Q  115 aagtgttgcctataaaagga 134  Q
    |||||  |||||||||||||    
T  40287009 aagtgaggcctataaaagga 40286990  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 22749080 - 22748919
Alignment:
Q  16 gaaacatgatcaacttcacgcacctagtacagatgagtcatatggacctcagagggttaatgggtctggacatcaaaagaaagacccgttagatcaagaa 115  Q
    |||||||||||| || ||||  ||| ||||| |||||  |||||||||| ||||||||||| || ||||| ||| |||||||| ||| |||| |||||||    
T  22749080 gaaacatgatcagctccacgggcctggtacatatgagcgatatggaccttagagggttaataggcctggaaatccaaagaaaggcccattaggtcaagaa 22748981  T
Q  116 agtgttgcctataaaaggagacgccgagagagtagtaaggagatcgaattctttatcttgaa 177  Q
    |||||  ||||||||||||||| || |||||| |||||   |||| ||||| ||||||||||    
T  22748980 agtgtgacctataaaaggagacacctagagagcagtaaatggatcaaattcattatcttgaa 22748919  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 34220281 - 34220163
Alignment:
Q  13 aaggaaacatgatcaacttcacgcacctagtacagatgagtcatatggacctcagagggttaatgggtctggacatcaaaagaaagacccgttagatcaa 112  Q
    ||||||||||||||  || |||||  || |||||  |||  ||||| |||||||||| ||||||||| ||||||||| |||||||||||  ||||||| |    
T  34220281 aaggaaacatgatcggctccacgcgtctggtacaagtgatccatattgacctcagagagttaatgggcctggacatccaaagaaagacctattagatcta 34220182  T
Q  113 gaaagtgttgcctataaaa 131  Q
    |||| ||  ||||||||||    
T  34220181 gaaaatgaggcctataaaa 34220163  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 28549923 - 28549792
Alignment:
Q  16 gaaacatgatcaacttcacgcacctagtacagatgagtcatatggacctcagagggttaatgggtctggacatcaaaagaaagacccgttagatcaagaa 115  Q
    |||||||||| |||| || ||  || ||||| ||||| ||||||||| ||| ||||||||||   ||||||||| ||||| |||||| |||| |||| ||    
T  28549923 gaaacatgataaactccaggcgtctggtacaaatgagccatatggacgtcaaagggttaatgtacctggacatccaaagagagacccattaggtcaaaaa 28549824  T
Q  116 agtgttgcctataaaaggagacgccgagagag 147  Q
    | ||   ||||||||||||||| || ||||||    
T  28549823 actgagacctataaaaggagacacctagagag 28549792  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 137
Target Start/End: Original strand, 3470659 - 3470749
Alignment:
Q  45 cagatgagtcatatggacctcagagggttaatgggtctggacatcaaaagaaagacccgttagatcaagaaagtgttgcctataaaaggagac 137  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||| ||| ||| |||| ||||||||| |  ||||||||||||||||    
T  3470659 cagatgagtcatatggacctcag--ggttaatgggtctggacatccaaaggaaggcccattaggtcaagaaagcgaggcctataaaaggagac 3470749  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 42494151 - 42494058
Alignment:
Q  45 cagatgagtcatatggacctcagagggttaatgggtctggacat-caaaagaaagacccgttagatcaagaaagtgttgcctataaaaggagac 137  Q
    |||||||| ||||||||||| |||||||||||||| ||| |||| ||||||| || ||  |||| |||||||||||  ||||||||||||||||    
T  42494151 cagatgagccatatggaccttagagggttaatgggcctgaacatccaaaagagaggcctattaggtcaagaaagtgaggcctataaaaggagac 42494058  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 13968990 - 13969032
Alignment:
Q  185 cagctcacttattgtaattaacttgggtttacatacgtcaaca 227  Q
    |||||||||| |||||||||||||| |||||||||||| ||||    
T  13968990 cagctcacttgttgtaattaacttgtgtttacatacgtgaaca 13969032  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 4108947 - 4108903
Alignment:
Q  185 cagctcacttattgtaattaacttgggtttacatacgtcaacagg 229  Q
    |||||||| | |||||||||||||| |||||||||||| ||||||    
T  4108947 cagctcacctgttgtaattaacttgtgtttacatacgtaaacagg 4108903  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 3400385 - 3400534
Alignment:
Q  13 aaggaaacatgatcaacttcacgcacctagtacagatgagtcatatggacctcagagggttaatgggtctggacatcaaaagaaagacccgttagatcaa 112  Q
    |||||| | |||||| || || || ||||||||| ||||| |||||||||||||   | |||||||||||||| ||| ||||||||  || |||| ||||    
T  3400385 aaggaatcttgatcagctccatgcgcctagtacaaatgagccatatggacctcaa--gattaatgggtctggagatccaaagaaaggtccattaggtcaa 3400482  T
Q  113 gaaagtgttgcctataaaaggagacgccgagagagtagtaaggagatcgaat 164  Q
    |||||||  ||||||||||||||||  | |||||| ||||||| ||| ||||    
T  3400483 gaaagtgaggcctataaaaggagacaactagagagcagtaaggggatggaat 3400534  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 13117194 - 13117330
Alignment:
Q  43 tacagatgagtcatatggacctcagagggttaatgggtctggacatcaaaagaaagacccgttagatcaagaaagtgttgcctataaaaggagacgccga 142  Q
    |||| ||||| ||||||||| |||||||||||||||| || ||||   |||||||| ||  |||| |||||||||||  ||||||||||||||||  | |    
T  13117194 tacaaatgagccatatggacttcagagggttaatgggcctagacagtcaaagaaaggcctattaggtcaagaaagtgaggcctataaaaggagacatcta 13117293  T
Q  143 gagagtagt-aaggagatcgaattctttatcttgaac 178  Q
    ||||| | | |||| |||||||||| |||||||||||    
T  13117294 gagagcaatgaaggggatcgaattcattatcttgaac 13117330  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 27121177 - 27121313
Alignment:
Q  16 gaaacatgatcaacttcacgcacctagtacagatgagtcatatggacctcagagggttaatgggtctggacatcaaaagaaagacccgttagatcaagaa 115  Q
    |||||||||| | || ||||| |||  || ||||||| ||||||||| ||| |||||||||||||||||||||  |||||||| ||| |||| |||| ||    
T  27121177 gaaacatgataagctccacgcgcctgatatagatgagccatatggacttcaaagggttaatgggtctggacatacaaagaaaggcccattaggtcaataa 27121276  T
Q  116 agtgttgcctataaaaggagacgccgagagagtagta 152  Q
    ||||    |||||||||||||| || |||||| ||||    
T  27121277 agtgagatctataaaaggagacacctagagagcagta 27121313  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 18573546 - 18573690
Alignment:
Q  32 cacgcacctagtacagatgagtcatatggacctcagagggttaatgggtctggacatcaaaagaaagacccgttagatcaagaaagtgttgcctataaaa 131  Q
    ||||| ||| ||||||||||| ||||||||||||||  |||||||||  ||||| ||| ||  |||| ||| |||| |||||||||||  ||||||||||    
T  18573546 cacgcgcctggtacagatgagccatatggacctcag--ggttaatggccctggatatccaagaaaaggcccattaggtcaagaaagtgaggcctataaaa 18573643  T
Q  132 ggagacgccgagagagtagtaaggagatcgaattctttatcttgaac 178  Q
    ||||||  | | |||| |||| |  |||||||||| |||||||||||    
T  18573644 ggagacaactaaagagcagtatgaggatcgaattcattatcttgaac 18573690  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 509918 - 510024
Alignment:
Q  13 aaggaaacatgatcaacttcacgcacctagtacagatgagtcatatggacctcagagggttaatgggtctggacatcaaaagaaagacccgttagatcaa 112  Q
    |||||||| |||||| || ||| | ||| ||||| ||||| ||||||||||||||||||||||||||  || ||||| ||||| || ||| |||| ||||    
T  509918 aaggaaacttgatcagctccacacgcctggtacacatgagccatatggacctcagagggttaatgggcttgaacatccaaagagaggcccattagttcaa 510017  T
Q  113 gaaagtg 119  Q
    |||||||    
T  510018 gaaagtg 510024  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 33933238 - 33933175
Alignment:
Q  16 gaaacatgatcaacttcacgcacctagtacagatgagtcatatggacctcagagggttaatggg 79  Q
    |||||||||||| || ||||| ||| ||| | ||||||||||||||||| ||||||||||||||    
T  33933238 gaaacatgatcagctccacgcgcctggtataaatgagtcatatggaccttagagggttaatggg 33933175  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 25699058 - 25698982
Alignment:
Q  58 tggacctcagagggttaatgggtctggacatcaaaagaaagacccgttagatcaagaaagtgttgcctataaaagga 134  Q
    |||| ||||||||||||||||| ||| ||||| ||||| ||  || |||||||||| |||||  |||||||||||||    
T  25699058 tggatctcagagggttaatgggcctgaacatcgaaagagaggtccattagatcaaggaagtgaggcctataaaagga 25698982  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 5538831 - 5538788
Alignment:
Q  54 catatggacctcagagggttaatgggtctggacatcaaaagaaa 97  Q
    |||||||||||||||||||||||||| || |||||| |||||||    
T  5538831 catatggacctcagagggttaatgggactagacatccaaagaaa 5538788  T

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