View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_high_2 (Length: 543)
Name: NF10107_high_2
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 36883138 - 36882692
Alignment:
| Q |
18 |
aagggaagagcaaaatctggcgaaatgggtttcccacaggcttcgtgataacgtgggcttggaacagatagtggatcccagtatcaaaacaacattgtca |
117 |
Q |
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| T |
36883138 |
aagggaagagcaaaatctggcgaaatgggtttcccacaggcttcgtgataacatgggcttggaacagatagtggatcccagtatcaaaacaacattgtca |
36883039 |
T |
|
| Q |
118 |
tccaaggctctttctggttatactgatatcatctccctctgtatgcaggtattaacacctaatggtataattcaaactcagtaagaaattgaaaaactta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36883038 |
tccaaggctctttctggttatactgatatcatctccctctgtatgcaggtattaacacctaatggtataattcaaactcagtaagaaattgaaaaactta |
36882939 |
T |
|
| Q |
218 |
gcgattgtttgtgtcttttgtgtacagccttcaaaacaacctcgtcccccaatgtctgaagttgtgagctctcttatatcttttggccaagagttcaact |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36882938 |
gcgattgtttgtgtcttttgtgtacagccttcaaaacaacttcgtcccccaatgtctgaagttgtgagctctcttatatcttttggccaagagttcaact |
36882839 |
T |
|
| Q |
318 |
ttgcaaagagtggtgtagcagatggtgctgatctatttgagaagtcctctttctgttcagccaacacaggctttgtaaattcgccaacatccagccacct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36882838 |
ttgcaaagagtggtgtagcagatggtgctgatctatttgagaagtcttctttctgttcagccaacacaggctttgtaaattcgccaacatccagccacct |
36882739 |
T |
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| Q |
418 |
atcagcctgatgtacaacatctgtgtgtaacatagaagtcaactggg |
464 |
Q |
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| T |
36882738 |
atcagcctgatgtacaacatctgtgtgtaacatagaagtcaactggg |
36882692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 4168373 - 4168407
Alignment:
| Q |
18 |
aagggaagagcaaaatctggcgaaatgggtttccc |
52 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
4168373 |
aaggaaagagcaaaatctggcgaaatgggtttccc |
4168407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 41521910 - 41521876
Alignment:
| Q |
18 |
aagggaagagcaaaatctggcgaaatgggtttccc |
52 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
41521910 |
aaggaaagagcaaaatctggcgaaatgggtttccc |
41521876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 7982892 - 7982858
Alignment:
| Q |
18 |
aagggaagagcaaaatctggcgaaatgggtttccc |
52 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
7982892 |
aaggaaagagcaaaatctggcgaaatgggtttccc |
7982858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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