View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10107_high_29 (Length: 228)

Name: NF10107_high_29
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10107_high_29
NF10107_high_29
[»] chr3 (1 HSPs)
chr3 (1-204)||(1153841-1154044)
[»] chr5 (11 HSPs)
chr5 (1-204)||(35410768-35410971)
chr5 (1-204)||(35754909-35755112)
chr5 (1-204)||(35386107-35386310)
chr5 (1-204)||(35366955-35367158)
chr5 (64-195)||(35376570-35376701)
chr5 (64-195)||(35423829-35423960)
chr5 (150-196)||(35437257-35437303)
chr5 (152-196)||(10716903-10716947)
chr5 (152-196)||(10746978-10747022)
chr5 (152-196)||(10740662-10740706)
chr5 (152-196)||(10763096-10763140)
[»] chr7 (1 HSPs)
chr7 (1-204)||(29623020-29623223)
[»] chr1 (3 HSPs)
chr1 (1-203)||(10420467-10420669)
chr1 (1-204)||(10415579-10415782)
chr1 (164-203)||(10409883-10409922)
[»] chr2 (3 HSPs)
chr2 (1-196)||(30663117-30663312)
chr2 (1-196)||(30671797-30671992)
chr2 (1-196)||(30626166-30626361)
[»] chr6 (2 HSPs)
chr6 (152-196)||(12899772-12899816)
chr6 (152-196)||(12958280-12958324)
[»] scaffold0692 (1 HSPs)
scaffold0692 (152-196)||(7495-7539)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 1153841 - 1154044
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  1153841 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacaaaaagggtagattttgctcttg 1153940  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1153941 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 1154040  T
Q  201 agcc 204  Q
    ||||    
T  1154041 agcc 1154044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 35410768 - 35410971
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    ||||| |||||||| |||| |||||||||| | ||||||||||  ||||||||||||||||| |||||||| |||||||||||| ||||  || ||||||    
T  35410768 gagttaatgcctaatgggaatctagaaaagtttttgcatgataacgaagggtctgaaaatcataatctcaacctcacacaaaggttagacattgctcttg 35410867  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    || |||||||||||||||||| |||||||||||| ||| |||||| |  ||||||||||||| ||||||| ||||| ||||||||||| ||||||  |||    
T  35410868 atgtagctcatgcacttgattatcttcacaatgagacagagcaagctgtagttcactgtgatcttaagccgagcaacgttcttcttgacgatgactttgt 35410967  T
Q  201 agcc 204  Q
    ||||    
T  35410968 agcc 35410971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 35754909 - 35755112
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    ||||||||| | || |||||||| |||||| ||||||| |||| ||||||||| | ||||   |||||||| |||||||||||| ||||  || ||||||    
T  35754909 gagttcatgtcaaatgggagtcttgaaaagttgttgcacgataatgaagggtcaggaaattttaatctcaacctcacacaaaggttagacattgctcttg 35755008  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    || ||||||||||| | |||| |||||||||||||||| | |||||   ||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  35755009 atgtagctcatgcattggattatcttcacaatgatacagaacaagtcgtagttcactgtgatattaagccaagcaatgttcttcttgatgatgaaattgt 35755108  T
Q  201 agcc 204  Q
    ||||    
T  35755109 agcc 35755112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 35386107 - 35386310
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    ||||||||| | || | |||||| |||||| | |||||  ||| |||||||||||||||||| |||||||| |||||| ||||| ||||  || ||||||    
T  35386107 gagttcatgtcaaatgagagtcttgaaaagtttttgcacaataatgaagggtctgaaaatcataatctcaacctcacataaaggttagacattgctcttg 35386206  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    || |||||||||||||||||| |||||||||||||||| ||||||    ||||||||||||| ||||||||||||| ||||||||||| ||||||  |||    
T  35386207 atgtagctcatgcacttgattatcttcacaatgatacagagcaagccgtagttcactgtgatcttaagccaagcaacgttcttcttgacgatgactttgt 35386306  T
Q  201 agcc 204  Q
    ||||    
T  35386307 agcc 35386310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 35366955 - 35367158
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    |||||||||||||| || |||||||||||| |  |||||||||  |||||||||| |||||| |||||||  |||| ||| || || ||  || ||||||    
T  35366955 gagttcatgcctaagggaagtctagaaaagcttctgcatgataacgaagggtctggaaatcataatctcagcctcagacacagagttgacattgctcttg 35367054  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    || ||||||||||||| |||| ||||||||||| |||| || ||   | ||||||||||||||||||||| ||||| |||||||| || ||||||| |||    
T  35367055 atgtagctcatgcactcgattatcttcacaatggtacagagaaatccatagttcactgtgatattaagccgagcaacgttcttctggacgatgacactgt 35367154  T
Q  201 agcc 204  Q
    ||||    
T  35367155 agcc 35367158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 35376570 - 35376701
Alignment:
Q  64 aatctcaagctcacacaaagggtagatttttctcttgatatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgata 163  Q
    ||||||||  ||||||||||| ||||  || |||| ||  ||||||||||| | |||| |||||||||||||||| ||||||||  |||||| ||||||     
T  35376570 aatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatg 35376669  T
Q  164 ttaagccaagcaatgttcttcttgatgatgac 195  Q
    ||||||||||||||||||||||||||||||||    
T  35376670 ttaagccaagcaatgttcttcttgatgatgac 35376701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 35423829 - 35423960
Alignment:
Q  64 aatctcaagctcacacaaagggtagatttttctcttgatatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgata 163  Q
    ||||||||  ||||||||||| ||||  || |||| ||  ||||||||||| | |||| |||||||||||||||| ||||||||  |||||| ||||||     
T  35423829 aatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatg 35423928  T
Q  164 ttaagccaagcaatgttcttcttgatgatgac 195  Q
    |||| |||||||||||||||||||||||||||    
T  35423929 ttaaaccaagcaatgttcttcttgatgatgac 35423960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 35437257 - 35437303
Alignment:
Q  150 agttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    |||||||||||||||||||||||| ||||||||||| || |||||||    
T  35437257 agttcactgtgatattaagccaagtaatgttcttctcgacgatgaca 35437303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 10716947 - 10716903
Alignment:
Q  152 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||    
T  10716947 ttcattgtgatcttaagccaagcaatgtccttcttgatgatgaca 10716903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 10747022 - 10746978
Alignment:
Q  152 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||    
T  10747022 ttcactgtgatctcaagccaagcaatgtccttcttgatgatgaca 10746978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 10740706 - 10740662
Alignment:
Q  152 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    |||| |||||| | |||||||||||||| ||||||||||||||||    
T  10740706 ttcattgtgatctaaagccaagcaatgtccttcttgatgatgaca 10740662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 10763140 - 10763096
Alignment:
Q  152 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    |||| |||||| | |||||||||||||| ||||||||||||||||    
T  10763140 ttcattgtgatctaaagccaagcaatgtccttcttgatgatgaca 10763096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 29623223 - 29623020
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    ||||||||||||||   ||||||||||||||||||||| |||| |||||| |||| ||  || |||||||| |||||||||||| ||||  || ||||||    
T  29623223 gagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagacattgctcttg 29623124  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    || ||||||||||| | |||| |||||||||||||| | | |||| |  ||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  29623123 atgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgatgacattgt 29623024  T
Q  201 agcc 204  Q
    ||||    
T  29623023 agcc 29623020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 10420669 - 10420467
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    |||||||||||||| ||||||||||||||| |  |||| ||||  |||||||||| || ||| |||||||  |||| ||||||||| ||  || ||||||    
T  10420669 gagttcatgcctaaggggagtctagaaaagcttctgcacgataaagaagggtctggaattcataatctcagcctcagacaaagggttgacattgctcttg 10420570  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    || |||||||||||||| ||| ||||||||||| |||| ||||||  | ||||||||||||||||||||| ||||| |||||||| || ||||||| |||    
T  10420569 atgtagctcatgcacttaattatcttcacaatggtacagagcaagccatagttcactgtgatattaagccgagcaacgttcttctggacgatgacattgt 10420470  T
Q  201 agc 203  Q
    |||    
T  10420469 agc 10420467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 10415782 - 10415579
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    |||||||||||||| |||||||| ||||||||  |||| ||||  |||||||||| || ||| |||||||  ||  |||||||| ||||  |  ||||||    
T  10415782 gagttcatgcctaaggggagtctggaaaagattctgcacgataacgaagggtctggaattcataatctcagcctggcacaaaggttagacatcgctcttg 10415683  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    || |||||||||||||||||| |||||||||||||||| ||||||    ||||||||||||| ||||| ||||||| ||||||||||| ||||||  |||    
T  10415682 atctagctcatgcacttgattatcttcacaatgatacagagcaagccgtagttcactgtgatgttaagtcaagcaacgttcttcttgacgatgacgttgt 10415583  T
Q  201 agcc 204  Q
    ||||    
T  10415582 agcc 10415579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 10409922 - 10409883
Alignment:
Q  164 ttaagccaagcaatgttcttcttgatgatgacaatgtagc 203  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  10409922 ttaaaccaagcaatgttcttctcgatgatgacaatgtagc 10409883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 30663117 - 30663312
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    |||||||||||||| ||||||||||||||| |  |||| ||||  |||| ||||| || ||| |||||||  |||||||||||||| ||  || ||||||    
T  30663117 gagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaagagtctggaattcataatctcagcctcacacaaagggttgacattgctcttg 30663216  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    || ||||||||||| | |||| ||||||||||| |||  || | |||  ||||||||||||| | || |||| |||||||||||||||||||||||    
T  30663217 atgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcactgtgatgtgaaaccaaacaatgttcttcttgatgatgaca 30663312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 30671797 - 30671992
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    |||||||||||||| ||||||||||||||| |  |||| ||||  |||| ||||| || ||| |||||||  |||||||||||||| ||  || ||||||    
T  30671797 gagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaagagtctggaattcataatctcagcctcacacaaagggttgacattgctcttg 30671896  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    || ||||||||||| | |||| ||||||||||| |||  || | |||  ||||||||||||| | || |||| |||||||||||||||||||||||    
T  30671897 atgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcactgtgatgtgaaaccaaacaatgttcttcttgatgatgaca 30671992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 30626166 - 30626361
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    |||||||||||||| ||||||||||||||| |  |||| ||||  |||| ||||| || ||| |||||||  |||||||||||||| ||  || ||||||    
T  30626166 gagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaagagtctggaattcataatctcagcctcacacaaagggttgacattgctcttg 30626265  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    || ||||||||||| | |||| ||||||||||| |||  || | |||  |||||| |||||| | || |||| |||||||||||||||||||||||    
T  30626266 atgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcaatgtgatgtgaaaccaaacaatgttcttcttgatgatgaca 30626361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 12899772 - 12899816
Alignment:
Q  152 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||    
T  12899772 ttcattgtgatataaagccaagcaatgtccttcttgatgatgaca 12899816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 12958280 - 12958324
Alignment:
Q  152 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    ||||||||||| | |||||||||||||| |||||||||| |||||    
T  12958280 ttcactgtgatctaaagccaagcaatgtccttcttgatggtgaca 12958324  T

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Target: scaffold0692 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 7495 - 7539
Alignment:
Q  152 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    |||| |||||| | |||||||||||||| ||||||||||||||||    
T  7495 ttcattgtgatctaaagccaagcaatgtccttcttgatgatgaca 7539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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