View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_high_3 (Length: 536)
Name: NF10107_high_3
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 97 - 521
Target Start/End: Original strand, 13456974 - 13457391
Alignment:
| Q |
97 |
caacgaacgatcacttttacatcgagatctatctaaacacttgatcaattgctagcacaatcatcatccacaaattatggtatactttaatttagagggg |
196 |
Q |
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| T |
13456974 |
caacgaacgatcacttttacatcgagatctatctaaacacttgatcaattgctagcacaatcatcatccacaaattatggtatactttaatttagagggg |
13457073 |
T |
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| Q |
197 |
aagcaaaagtaagaattgaatctacagcacaagtacaatatgaatttgtgaagcttgttaagtcattagtaacttcttgagctacaagaacagttctcaa |
296 |
Q |
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| T |
13457074 |
aagcaaaagtaagaattgaatctacagcacaagtacaatatgaatttgtgaagcttgttaagtcattagtaacttcttgagctacaagaacagttctcaa |
13457173 |
T |
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| Q |
297 |
ttttcaaatttttgcatgttttgctttcatgcatcagcatggatacaatggaaaattatcttgcaaattttgaggtgcttgatcaaaggaaaactctcat |
396 |
Q |
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| T |
13457174 |
ttttcaaatttttgtatgttttgctttcatgattcagcatggatacaatggaaaattat-ttgcaaattttgaggtgcttgatcaaaggaaaactctcat |
13457272 |
T |
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| Q |
397 |
gtctagtgcaatatggtactaggaggataagaaaattgcagttgatttgtaagtttatatcacttgccatggacaatttaaagcaacaaaataatcaaaa |
496 |
Q |
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| T |
13457273 |
gtctagtgcaa-----tactaggaggataagaaaattacagttgatttgtaagtttatatcacttgccatggacaatttaaaacaacaaaataatcaaaa |
13457367 |
T |
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| Q |
497 |
ggcatgccatcccgtttaaggaaac |
521 |
Q |
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| T |
13457368 |
-gcatgccatcccgtttaaggaaac |
13457391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 13456820 - 13456906
Alignment:
| Q |
13 |
agagatgctcaaagttaaagtgtctttacaccatatcatccttcaccaatgaagtaaataccattatattcggccatttaaacccaa |
99 |
Q |
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| T |
13456820 |
agagatgctcaaagttaaagtgtctttacaccatatcatccttcaccaatgaagtaaataccattacattcggccatttaaacccaa |
13456906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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