View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_high_5 (Length: 457)
Name: NF10107_high_5
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Complemental strand, 51000120 - 50999684
Alignment:
| Q |
16 |
atctttgacatcaaatgcaaatgaaattgatcagcacagagcttctttgtatgagaatgtagagttacagaatccttctcaagtctattcccatgctcaa |
115 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51000120 |
atctttgacatcaaatgcaaatgaaattgataagcacagagcttctgagtatgagaatgtagagttacagaatccttctcaagtctattctcatgctcaa |
51000021 |
T |
|
| Q |
116 |
tcaaccaacagttccatacatcattgtgcacctcagcttgcacatgaagctaccggttagttgtggaaaagaataggaaattttgcctgctatgtctgtt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51000020 |
tcaaccaacagttccatacatcattgtgcacctcagcttgcacatgaagctaccggttagttgtggaaaagaataggaaattttgcctgctatgtctgtc |
50999921 |
T |
|
| Q |
216 |
tataatgccaattttgtttggatttttgaacatgggaa-nnnnnnnnatttaggattttctcagttattgaggaaccccattatttcatcatggagatcg |
314 |
Q |
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||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50999920 |
tataatgccaattttgtttggatttttaaacatgggaatttttttttatttaggattttctcagttaatgaggaaccccattatttcatcatggagatcg |
50999821 |
T |
|
| Q |
315 |
gacaattatcagaatgttaatcaggtgtggtaattgcaattatcaactctatttttaaactttgacactctgccttgatttcctttatgaatccttgtta |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50999820 |
gacaattatcagaatgttaatcaggtgtggtaattgcaattatcaactatatttttaaactttgacactctgccttgatttcctttatgaatccttgtta |
50999721 |
T |
|
| Q |
415 |
aagtgtacatatattccaaattttgggagtcctatgc |
451 |
Q |
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| T |
50999720 |
aagtgtacatatattccaaattttgggagtcctatgc |
50999684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 22393158 - 22393310
Alignment:
| Q |
16 |
atctttgacatcaaatgcaaatgaaattgatcagcacagagcttctttgtatgagaatgtagagttacagaatccttctcaagtctattcccatgctcaa |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||| | |||||||||||| ||||||| |||| | ||| ||||| || ||||||||| |
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| T |
22393158 |
atctttgacatcaagtgcaaatgaaattgatcaggacagagctcttgagtatgagaatgtcaagttacaaaatcatcctcgagtctcctctcatgctcaa |
22393257 |
T |
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| Q |
116 |
tcaaccaacagttccatacatcattgtgcacctcagcttgcacatgaagctac |
168 |
Q |
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|| |||| || |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22393258 |
tctaccagcaattccatacatcattgtgcacctcaacttgcacatgaagctac |
22393310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 22393648 - 22393505
Alignment:
| Q |
16 |
atctttgacatcaaatgcaaatgaaattgatcagcacagagcttctttgtatgagaatgtagagttacagaatccttctcaagtctattcccatgctcaa |
115 |
Q |
| |
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|||||||||||||| |||||||||||||||||| | | ||||||| |||||| ||||| ||||||| |||| | |||||||| || || ||||| |
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| T |
22393648 |
atctttgacatcaagggcaaatgaaattgatcaggatatagcttctgagtatgaaaatgtcaagttacaaaatcgtcatcaagtctcctctcaaactcaa |
22393549 |
T |
|
| Q |
116 |
tcaaccaacagttccatacatcattgtgcacctcagcttgcaca |
159 |
Q |
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| | || |||||||||||||||||||||||||||||||||||| |
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| T |
22393548 |
ttagtcagcagttccatacatcattgtgcacctcagcttgcaca |
22393505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 22393491 - 22393454
Alignment:
| Q |
270 |
ttttctcagttattgaggaaccccattatttcatcatg |
307 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| |
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| T |
22393491 |
ttttctgagttattgaggaacccctttatttcatcatg |
22393454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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