View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_high_8 (Length: 414)
Name: NF10107_high_8
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 412
Target Start/End: Original strand, 45466607 - 45467010
Alignment:
| Q |
17 |
tatcccgcttttacaattgggcaagaaagaaaagaagtcccatgccttaggccctaccttatccaatcatccaaaaatgatttccttccattgaattcac |
116 |
Q |
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| T |
45466607 |
tatcccgcttttacaattgcg-aagaaagaaaagaagtcccatgccctaggccctaccttatccaatcatccaaaaatgatttccttccattgaattcac |
45466705 |
T |
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| Q |
117 |
aattccatcaaaatcaacagccaccaattgttact---------atcatcatcattcatcattcatggagnnnnnnnnnnnnnnnnnnnnntatccaaca |
207 |
Q |
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| T |
45466706 |
aattccatcaaaatcaacagccaccaattgttactcctgaaaacatcatcatcattcatcattcatggagaacaacaaccaacaacaacaatatccaaca |
45466805 |
T |
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| Q |
208 |
ccttcacccacggcagttacaccaccaccattccaacatcttctcnnnnnnnnnnnnnnnnngcttcaaatgttctggtcctaccaacgtcaagaaatcg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45466806 |
ccttcacccacggcagttacaccaccaccattccaacatcttctccaacaacaacaacaacagcttcaaatgttctggtcctaccaacgtcaagaaatcg |
45466905 |
T |
|
| Q |
308 |
aacacgtcaatgatttcaaaaaccatcaacttccattagcacgcattaagaaaatcatgaaagctgatgaagacgtacgcatgatttctgcagaagctcc |
407 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
45466906 |
aacacgtcaatgacttcaaaaaccatcaacttccattagcacgcattaagaaaatcatgaaagctgatgaagacgttcgcatgatttctgcagaagcacc |
45467005 |
T |
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| Q |
408 |
aattc |
412 |
Q |
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| T |
45467006 |
aattc |
45467010 |
T |
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