View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_high_9 (Length: 407)
Name: NF10107_high_9
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 32416849 - 32416459
Alignment:
| Q |
1 |
agctgcaccaacttgtaacacaataactatacctgacctaaaccatgaagaactagaatctctcctagagtttctctacagtggtacattacctttggaa |
100 |
Q |
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| T |
32416849 |
agctgcaccaacttgtaacacaataactatacctgacctaaaccatgaagaactagaatctctcctagagtttctctacagtggtacattacctttggaa |
32416750 |
T |
|
| Q |
101 |
agattggagaaacatgtgtatgccttgtcacaagcagctgataagtatattatcccacatttgctgaaatactgtgaaagatacttgttcagctcactta |
200 |
Q |
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| T |
32416749 |
aaattggagaaacatgtgtatgccttgtcacaagcagctgataagtatattatcccacatttgctgaaatactgtgaaagatacttgttcagctcactta |
32416650 |
T |
|
| Q |
201 |
gtacttctaatgcatttgagacactagaaattgctgatacctgttcaaaccaagatttgaaggagacaacctttaatttcttagttaaaaatattgagca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32416649 |
gtacttctaatgcatttgagacactagaaattgctgatacttgttcaaaccaagatttgaaggagacaacctttaatttcttagttaaaaatattgggct |
32416550 |
T |
|
| Q |
301 |
tatggttacttctcctaaatttgaagcttttgtgcataggagtccacatttaactgtgcaattagtttcaagagcatttgtgaatggttcc |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32416549 |
tatggttacttctcctaaatttgaagcttttgtgcataggagtccacatttaactgtgcaattagtttcaagagcatttgtgaatggttcc |
32416459 |
T |
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