View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_low_12 (Length: 358)
Name: NF10107_low_12
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 1323878 - 1324095
Alignment:
| Q |
18 |
cagagaggatcaaaactggtttccttcacttcaagaaagagaaatatgagttagtcactaaactcaatttaattacttatatctttaatttcttgtagct |
117 |
Q |
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| T |
1323878 |
cagagaggatcaaaactggtttccttcacttcaagaaagagaaatatgagttagtcactaaactcaatttaattacttatatctttaatttcttgtagct |
1323977 |
T |
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| Q |
118 |
taagctttctcattcaattttattaattttttccacagcacaaaaccagctttgtatggtgaacttgccaaaggccaagnnnnnnnggtatgcaaataat |
217 |
Q |
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| T |
1323978 |
taagctttctcattcaattttattaattttttccacagcacaaaaccagctttgtatggtgaacttgccaaaggccaagcccccccggtatgcaaataat |
1324077 |
T |
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| Q |
218 |
tagtcgatgtagtgatcg |
235 |
Q |
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| T |
1324078 |
tagtcgatgtagtgatcg |
1324095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 249 - 340
Target Start/End: Original strand, 1324177 - 1324268
Alignment:
| Q |
249 |
gagaccgaatcctcgaaattattgaccaaatataaattcatttctaaatcggaagcaacgataaactaaatttacatctcctttgtttactt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1324177 |
gagaccgaatcctcgaaattattgaccaaatataaattcatttctaaatcggaagcaacgataaactaaatttacatctcctttgtttactt |
1324268 |
T |
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