View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_low_13 (Length: 332)
Name: NF10107_low_13
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 32430454 - 32430148
Alignment:
| Q |
10 |
cagagataaatgaatagcaaatacatatcattgcacaactatacacacctttctatcatttaatgaaggctttgcagatccaacatcaagacccttgtat |
109 |
Q |
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| T |
32430454 |
cagagataaatgaatagcaaatacatatcattgcacaactatacacacctttctatcatttaatgaaggctttgcagatccaacatcaagacccttgtat |
32430355 |
T |
|
| Q |
110 |
acctgtaataaaatccgaggaagccatcttgaattaagaaaacatcaaaactagttccattgtaatgtataacnnnnnnncaggtaacattgtaatgaac |
209 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32430354 |
acctgtaataaaatccaaggaagccatcttgaattaagaaaaaatcaaaactagttccattgtaatgtataactttttttcaggtaacattgtaatgaac |
32430255 |
T |
|
| Q |
210 |
aagtcaaagagaaatatcatttccatatacatagtaatttaatttcacaacaacaacaaaaaataaacaaccacatttcgttcttaaccaatttctcact |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32430254 |
aagtcaaagagaaatatcatttccatatacatagtaatttaatttcacaacaacaacaaaaaataaacaaccacatttcgttcttaaccaatttctcact |
32430155 |
T |
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| Q |
310 |
taaaaat |
316 |
Q |
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||||||| |
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| T |
32430154 |
taaaaat |
32430148 |
T |
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