View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10107_low_15 (Length: 304)

Name: NF10107_low_15
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10107_low_15
NF10107_low_15
[»] chr5 (5 HSPs)
chr5 (18-298)||(24086733-24087012)
chr5 (18-298)||(29016290-29016569)
chr5 (178-292)||(29016535-29016656)
chr5 (178-292)||(24086978-24087099)
chr5 (178-277)||(29016628-29016726)
[»] chr3 (5 HSPs)
chr3 (18-121)||(16168766-16168870)
chr3 (250-288)||(38692423-38692461)
chr3 (246-288)||(25519468-25519510)
chr3 (255-288)||(2101651-2101684)
chr3 (258-287)||(27267150-27267179)
[»] chr6 (1 HSPs)
chr6 (218-288)||(12111455-12111525)
[»] chr7 (3 HSPs)
chr7 (255-288)||(7245942-7245975)
chr7 (226-287)||(34925284-34925345)
chr7 (226-287)||(5336540-5336603)
[»] chr2 (1 HSPs)
chr2 (255-288)||(27242770-27242803)
[»] chr4 (3 HSPs)
chr4 (213-277)||(4449682-4449746)
chr4 (248-288)||(18968310-18968350)
chr4 (248-288)||(20989527-20989567)


Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 24086733 - 24087012
Alignment:
Q  18 atagtaagatatcatcacaaaacctctgtgtctgcatcttttgtacaaagttctgatatccccatatttctatcaaataagaaagaaataatcaacaaca 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24086733 atagtaagatatcatcacaaagcctctgtgtctgcatcttttgtacaaagttctgatatccccatatttctatcaaataataaagaaataatcaacaaca 24086832  T
Q  118 ggaacatcaaatttgttcaaattctgctacggtacaagactgtcgcgccacagtagtcattatttgacaacagcttgtactaaattttatatcatagaac 217  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24086833 ggaacatcaaatttgttcaaattctgctatggtacaa-actgtcgcgccacagtagtcattatttgacaacagcttgtactaaattttatatcatagaac 24086931  T
Q  218 aataccgttttgctcaaattctactactctatagtgctatagccgatatttgacaacactttgtactaaatttcatctcac 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  24086932 aataccgttttgctcaaattctactactctatagtgctatagccgatatttgacaacactttgtaccaaatttcatatcac 24087012  T

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Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 29016290 - 29016569
Alignment:
Q  18 atagtaagatatcatcacaaaacctctgtgtctgcatcttttgtacaaagttctgatatccccatatttctatcaaataagaaagaaataatcaacaaca 117  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  29016290 atagtaagatatcatcacaaagcctctgtgtctgcatcttttgtacaaagttctgatatccccatatt-ctctcaaataagaaagaaataatcaacaaca 29016388  T
Q  118 ggaacatcaaatttgttcaaattctgctacggtacaagactgtcgcgccacagtagtcattatttgacaacagcttgtactaaattttatatcatagaac 217  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29016389 ggaacatcaaatttgttcaaattctgctgtggtacaagactgtcgcgccacaatagtcattatttgacaacagcttgtactaaattttatatcatagaac 29016488  T
Q  218 aataccgttttgctcaaattctactactctatagtgctatagccgatatttgacaacactttgtactaaatttcatctcac 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  29016489 aataccgttttgctcaaattctactactctatagtgctatagccgatatttgacaacactttgtaccaaatttcatatcac 29016569  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 292
Target Start/End: Original strand, 29016535 - 29016656
Alignment:
Q  178 tatttgacaacagcttgtactaaattttatatcatagaacaataccgttttgctcaa-------attctactactctatagtgctatagccgatatttga 270  Q
    ||||||||||||  |||||| |||||| |||||| ||||||||||||||| | ||||       ||||| ||||||| |||||||||||||  |||||||    
T  29016535 tatttgacaacactttgtaccaaatttcatatcacagaacaataccgtttagatcaaattctgcattctgctactctgtagtgctatagcccctatttga 29016634  T
Q  271 caacactttgtactaaatttca 292  Q
    ||||||||  ||||||||||||    
T  29016635 caacacttcatactaaatttca 29016656  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 292
Target Start/End: Original strand, 24086978 - 24087099
Alignment:
Q  178 tatttgacaacagcttgtactaaattttatatcatagaacaataccgttttgctcaa-------attctactactctatagtgctatagccgatatttga 270  Q
    ||||||||||||  |||||| |||||| |||||| ||||||||||||||| | ||||       ||||| ||||||| |||||||||||||  |||||||    
T  24086978 tatttgacaacactttgtaccaaatttcatatcacagaacaataccgtttagatcaaattctgcattctgctactctgtagtgctatagcccctatttga 24087077  T
Q  271 caacactttgtactaaatttca 292  Q
    ||||||||  || |||||||||    
T  24087078 caacacttcatattaaatttca 24087099  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 29016628 - 29016726
Alignment:
Q  178 tatttgacaacagcttgtactaaattttatatcatagaacaataccgttttgctcaaattctactactctatagtgctatagccgatatttgacaacact 277  Q
    ||||||||||||  |  |||||||||| | ||| | ||||||||||| || |||||||||||  |||||||||||| ||||| |  ||||||||||||||    
T  29016628 tatttgacaacacttcatactaaatttcacatcgtggaacaataccgattagctcaaattctgatactctatagtgttatag-ctctatttgacaacact 29016726  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 16168766 - 16168870
Alignment:
Q  18 atagtaagatatcatcacaaaacctctgtgtctgcatcttttgtacaaagttctgatatccccatatttctatcaaataagaaag-aaataatcaacaac 116  Q
    |||||||||||||||||| || || |||||  |||||  | ||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||     
T  16168766 atagtaagatatcatcacgaatcccctgtgcttgcatgctgtgtacaaagttctgatatccccatattgctatcaaataagaaagcaaagaatcaacaat 16168865  T
Q  117 aggaa 121  Q
    |||||    
T  16168866 aggaa 16168870  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 38692423 - 38692461
Alignment:
Q  250 agtgctatagccgatatttgacaacactttgtactaaat 288  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  38692423 agtgctatagccgctatttgacaacactttgtactaaat 38692461  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 25519468 - 25519510
Alignment:
Q  246 ctatagtgctatagccgatatttgacaacactttgtactaaat 288  Q
    ||||||| ||||||||| |||||||||||| ||||||||||||    
T  25519468 ctatagtactatagccgctatttgacaacaatttgtactaaat 25519510  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 2101651 - 2101684
Alignment:
Q  255 tatagccgatatttgacaacactttgtactaaat 288  Q
    |||||||| |||||||||||||||||||||||||    
T  2101651 tatagccgttatttgacaacactttgtactaaat 2101684  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 287
Target Start/End: Complemental strand, 27267179 - 27267150
Alignment:
Q  258 agccgatatttgacaacactttgtactaaa 287  Q
    ||||||||||||||||||||||||||||||    
T  27267179 agccgatatttgacaacactttgtactaaa 27267150  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 12111525 - 12111455
Alignment:
Q  218 aataccgttttgctcaaattctactactctatagtgctatagccgatatttgacaacactttgtactaaat 288  Q
    ||||||| |||| |||||||| |||||   |||||||||||| || |||||||||||  ||||||||||||    
T  12111525 aataccggtttgttcaaattccactacatgatagtgctatagtcgctatttgacaactttttgtactaaat 12111455  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 7245942 - 7245975
Alignment:
Q  255 tatagccgatatttgacaacactttgtactaaat 288  Q
    |||||||| |||||||||||||||||||||||||    
T  7245942 tatagccgctatttgacaacactttgtactaaat 7245975  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 34925284 - 34925345
Alignment:
Q  226 tttgctcaaattctactactctatagtgctatagccgatatttgacaacactttgtactaaa 287  Q
    |||| ||||||||| |||  ||| | ||||||||||| |||||||||||| |||||||||||    
T  34925284 tttgttcaaattctgctatgctacaatgctatagccgctatttgacaacattttgtactaaa 34925345  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 5336603 - 5336540
Alignment:
Q  226 tttgctcaaattctactactctatagtgctatagc--cgatatttgacaacactttgtactaaa 287  Q
    |||| |||||||||||||  |||||||||||||||  || ||||| |||||||||||| |||||    
T  5336603 tttgttcaaattctactatactatagtgctatagcaacgctatttaacaacactttgtgctaaa 5336540  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 27242770 - 27242803
Alignment:
Q  255 tatagccgatatttgacaacactttgtactaaat 288  Q
    |||||||| |||||||||||||||||||||||||    
T  27242770 tatagccgttatttgacaacactttgtactaaat 27242803  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 4449682 - 4449746
Alignment:
Q  213 agaacaataccgttttgctcaaattctactactctatagtgctatagccgatatttgacaacact 277  Q
    ||||||||| |  |||| ||||||||| ||||||||||  ||||| |||| ||||||||||||||    
T  4449682 agaacaataacaatttgttcaaattctgctactctataacgctattgccgttatttgacaacact 4449746  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 18968350 - 18968310
Alignment:
Q  248 atagtgctatagccgatatttgacaacactttgtactaaat 288  Q
    |||||| |||||||| |||||||||||| ||||||||||||    
T  18968350 atagtgttatagccgctatttgacaacattttgtactaaat 18968310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 20989567 - 20989527
Alignment:
Q  248 atagtgctatagccgatatttgacaacactttgtactaaat 288  Q
    |||| |||||||||| |||||||||||| ||||||||||||    
T  20989567 atagggctatagccgctatttgacaacattttgtactaaat 20989527  T

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