View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10107_low_17 (Length: 302)

Name: NF10107_low_17
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10107_low_17
NF10107_low_17
[»] chr1 (4 HSPs)
chr1 (1-167)||(29456983-29457149)
chr1 (168-285)||(29461783-29461900)
chr1 (98-187)||(29449134-29449223)
chr1 (2-49)||(29449062-29449109)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 29456983 - 29457149
Alignment:
Q  1 taaatttgtactcgcaaaagaaacctacaaagtattttcacacaaaaacacccnnnnnnnatcatgtcttgaatacgtgctcagactaaaaattatgata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  29456983 taaatttgtactcgcaaaagaaacctacaaagtattttcacacaaaaacaccctttttttatcatgtcttgaatacgtgctcagactaaaaattatgata 29457082  T
Q  101 ttttttctacaaggtatgttttatattgtaatatcataatgtggactattattccttttctgctgta 167  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29457083 ttttttctacaaggtatgttttatgttgtaatatcataatgtggactattattccttttctgctgta 29457149  T

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Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 168 - 285
Target Start/End: Original strand, 29461783 - 29461900
Alignment:
Q  168 gactttgactgccattccttgtgcctaaggttgttttatagatccaatagaagaaatagatacgatgtgtgtgttgttataagaagtggcagattattat 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29461783 gactttgactgccattccttgtgcctaaggttgttttatagatccaatagaagaaatagatacgatgtgtgtgttgttataagaagtggcagattattat 29461882  T
Q  268 tgataaatgtgtgctgtg 285  Q
    ||||||||||||||||||    
T  29461883 tgataaatgtgtgctgtg 29461900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 29449134 - 29449223
Alignment:
Q  98 atattttttctacaaggtatgttttatattgtaatatcataatgtggactattattccttttctgctgtagactttgactgccattcctt 187  Q
    |||||||||||||||  || ||||||| |||||||||||||| ||||||| ||| ||||||| ||||||||||||||| |||||| ||||    
T  29449134 atattttttctacaaattaagttttatgttgtaatatcataaggtggactcttaatccttttatgctgtagactttgaatgccatccctt 29449223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 29449062 - 29449109
Alignment:
Q  2 aaatttgtactcgcaaaagaaacctacaaagtattttcacacaaaaac 49  Q
    |||| |||||| ||||||||||||||||| | ||||||||||||||||    
T  29449062 aaatatgtacttgcaaaagaaacctacaaggcattttcacacaaaaac 29449109  T

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