View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10107_low_20 (Length: 276)
Name: NF10107_low_20
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_low_20 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 51047655 - 51047397
Alignment:
| Q |
16 |
aaaaacggcacataacaa-gtggttgttcagcattgtggcacaagagaaacaa-gatggnnnnnnnnnnnncatgaataaataggacaagaacaagggta |
113 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51047655 |
aaaaacagcacataacaaagtggttgttcagcatggtggcacaagagcaacaaagatgggaaaaaaaaaa-catgaataaataggacaagaacaagggta |
51047557 |
T |
|
| Q |
114 |
atataggaaactgaagagcagagtgagtttcttctgtctttcttcgcatatcagcgaggagataaaaaggcagtggggcccacgttttaataatctctct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| ||||||||||| |
|
|
| T |
51047556 |
atataggaaactgaagagcagagtgagtttcttctgtctttcttcgcatatcagcgaggagataaaaaggcagcggggcccgcatttttataatctctct |
51047457 |
T |
|
| Q |
214 |
ccacagattctttgcaaaccaaacgagagaaattagctatctctcttcaatttctctctc |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51047456 |
ccacagattctttgcaaaccaaacgagagaaattagctatctctcttcaatttctctctc |
51047397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 93 - 276
Target Start/End: Original strand, 10365633 - 10365816
Alignment:
| Q |
93 |
aataggacaagaacaagggtaatataggaaactgaagagcagagtgagtttcttctgtctttcttcgcatatcagcgaggagataaaaaggcagtggggc |
192 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | |||| ||||||||||||| |||||||||| ||||| || || || | ||||| || |||||| |
|
|
| T |
10365633 |
aataggacaggaacaagggtaatataggaaacatagtagcaaagtgagtttcttcggtctttcttcccatatgagggaagaaacaaaaaagctatggggc |
10365732 |
T |
|
| Q |
193 |
ccacgttttaataatctctctccacagattctttgcaaaccaaacgagagaaattagctatctctcttcaatttctctctcacc |
276 |
Q |
| |
|
|| | |||| |||||||||||| || |||||||||||||||||||||||| || | ||||||||||||| ||||||| |||| |
|
|
| T |
10365733 |
ccgcatttttataatctctctctgcaagttctttgcaaaccaaacgagagaagttggatatctctcttcaacttctctcccacc |
10365816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 276
Target Start/End: Original strand, 32819518 - 32819598
Alignment:
| Q |
196 |
cgttttaataatctctctccacagattctttgcaaaccaaacgagagaaattagctatctctcttcaatttctctctcacc |
276 |
Q |
| |
|
||||||||| ||||||||| || ||||| |||||||||| |||||| || | |||||||||||||||||||||||||| |
|
|
| T |
32819518 |
cgttttaatgatctctctcagcaatttcttctcaaaccaaacaagagaagttggttatctctcttcaatttctctctcacc |
32819598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 106848 - 106956
Alignment:
| Q |
85 |
catgaataaataggacaagaacaagggtaatataggaaactgaagagcagagtgagtttcttctgtctttcttcgcatatcagcgaggagataaaaaggc |
184 |
Q |
| |
|
||||||||||| ||||||||||||||||||| || ||||| |||||||| || |||||||||||||||||||||| ||||||||| ||||| |||| || |
|
|
| T |
106848 |
catgaataaattggacaagaacaagggtaatttaagaaacagaagagcaaagcgagtttcttctgtctttcttcggatatcagcgtggagaccaaaaagc |
106947 |
T |
|
| Q |
185 |
agtggggcc |
193 |
Q |
| |
|
||||||||| |
|
|
| T |
106948 |
agtggggcc |
106956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 39121821 - 39121919
Alignment:
| Q |
96 |
aggacaagaacaagggtaatataggaaactgaagagcagagtgagtttcttctgtctttcttcgcatatcagcgaggagataaaaaggcagtggggccc |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| ||||||||||||| |||||||||| ||||| || || || | ||||| |||||||||||| |
|
|
| T |
39121821 |
aggacaagaacaagggtaatataggaaacataatagcaaagtgagtttcttcagtctttcttcccatatgagggaagaaacaaaaaagcagtggggccc |
39121919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 272
Target Start/End: Complemental strand, 38783078 - 38782912
Alignment:
| Q |
104 |
aacaagggtaatataggaaactgaagagcagagtgagtttcttctgtctttcttcgcatatcagcgaggagataaaaaggcagtggggcccacgttttaa |
203 |
Q |
| |
|
||||||||||||||||||||| | | ||||||| |||||| ||||||||| || ||||||||||| | |||| ||| |||| |||||||||| | |
|
|
| T |
38783078 |
aacaagggtaatataggaaacacataaccagagtggatttcttagctctttcttctcacatcagcgaggaaacaaaatagcaatgggccccacgttttta |
38782979 |
T |
|
| Q |
204 |
taatctctctccacagattctttgcaaaccaaacgagagaaattagctatctctcttcaatttctctct |
272 |
Q |
| |
|
| ||||||||||| ||||| ||||||||||||||| | || || |||||||||||||||||||| |
|
|
| T |
38782978 |
tgatctctctccaac--ttcttctcaaaccaaacgagagtagttggccttctctcttcaatttctctct |
38782912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 1776138 - 1776243
Alignment:
| Q |
16 |
aaaaacggcacataacaa-gtggttgttcagcattgtggcacaagagaaacaagatggnnnnnnnnnnnn--catgaataaataggacaagaacaagggt |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1776138 |
aaaaacggcacataacaaagtggttgttcagcatggtggcacaagagggccaagatggaaagaaaaaaaaaacatgaataaataggacaagaacaagggt |
1776237 |
T |
|
| Q |
113 |
aatata |
118 |
Q |
| |
|
|||||| |
|
|
| T |
1776238 |
aatata |
1776243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University