View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_low_21 (Length: 265)
Name: NF10107_low_21
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 32430705 - 32430598
Alignment:
| Q |
1 |
atattcgtatatgaatccttgcttaaacaaatatagcttagtatcaaagaaaacagaccttcagatggatgaagtatgtcaaccagatgatgcggcactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32430705 |
atattcgtatatgaatccttgcttaaacaaatatagcttagtatcaaagaaaacagaccttcagatggatgaagtatgtcaaccagatgatgcggcactt |
32430606 |
T |
|
| Q |
101 |
cctaacca |
108 |
Q |
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|||||||| |
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| T |
32430605 |
cctaacca |
32430598 |
T |
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Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 32430547 - 32430441
Alignment:
| Q |
159 |
ccaattcgatgttacgactaaataacaaatcgaaaaagttacgacaggcaatccaagtcacaatagcaaggaacaaaatctatacatttctgacagagat |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
32430547 |
ccaattcgatgttacgactaaataacaaatcgaaaaagttacgacaggcaatccaagtcacaatggcaaggaacaaaatctatacatttctaacagagat |
32430448 |
T |
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| Q |
259 |
aaatgaa |
265 |
Q |
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||||||| |
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| T |
32430447 |
aaatgaa |
32430441 |
T |
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