View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10107_low_24 (Length: 255)

Name: NF10107_low_24
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10107_low_24
NF10107_low_24
[»] chr2 (5 HSPs)
chr2 (17-242)||(37778220-37778446)
chr2 (17-242)||(22988509-22988735)
chr2 (187-242)||(40653208-40653261)
chr2 (17-131)||(22989613-22989727)
chr2 (17-131)||(37903710-37903824)
[»] chr8 (1 HSPs)
chr8 (17-242)||(32208330-32208556)
[»] scaffold0061 (2 HSPs)
scaffold0061 (187-242)||(49959-50014)
scaffold0061 (123-159)||(49874-49910)
[»] scaffold0017 (2 HSPs)
scaffold0017 (187-242)||(148620-148675)
scaffold0017 (123-159)||(148724-148760)
[»] chr4 (2 HSPs)
chr4 (187-242)||(34738489-34738544)
chr4 (17-57)||(34738704-34738744)
[»] chr6 (1 HSPs)
chr6 (17-131)||(18881133-18881246)
[»] chr1 (1 HSPs)
chr1 (17-131)||(39621940-39622053)
[»] chr7 (2 HSPs)
chr7 (17-131)||(39072935-39073049)
chr7 (17-84)||(17026890-17026956)
[»] chr3 (2 HSPs)
chr3 (17-131)||(3744112-3744226)
chr3 (17-131)||(43267547-43267661)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 37778220 - 37778446
Alignment:
Q  17 ataaatatcattgcaagaacatgcaaaaatttgattcctcannnnnnn-caaagggtgaagaatatttggaggagattgaacatggtagattttctctat 115  Q
    |||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37778220 ataaatatcattgcaagaacatgcgaaaatttgattcctcattttttttcaaagggtgaagaatatttggaggagattgaacatggtagattttctctat 37778319  T
Q  116 ccgatgaaataaccatatttcattcacaaatacatatgcataaggtatattttagcctttatattgcactgtttggatttcattgtatatattgtgcctt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37778320 ccgatgaaataaccatatttcattcacaaatacatatgcataaggtatattttagcctttatattgcactgtttggatttcattatatatattgtgcctt 37778419  T
Q  216 gaacaagttaaatcacatgtttggtct 242  Q
    |||||| ||||||||||||||||||||    
T  37778420 gaacaaattaaatcacatgtttggtct 37778446  T

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Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 22988735 - 22988509
Alignment:
Q  17 ataaatatcattgcaagaacatgcaaaaatttgattcctcannnnnnn-caaagggtgaagaatatttggaggagattgaacatggtagattttctctat 115  Q
    |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22988735 ataaatatcattgcaagaacatgcaaaaatttgattcctcattttttttcaaagggtgaagaatatttggaggagattgaacatggtagattttctcaat 22988636  T
Q  116 ccgatgaaataaccatatttcattcacaaatacatatgcataaggtatattttagcctttatattgcactgtttggatttcattgtatatattgtgcctt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22988635 ccgatgaaataaccatatttcattcacaaatacatatgcataatgtatattttagcctttatattgcactgtttggatttcattatatatattgtgcctt 22988536  T
Q  216 gaacaagttaaatcacatgtttggtct 242  Q
    |||||| ||||||||||||||||||||    
T  22988535 gaacaaattaaatcacatgtttggtct 22988509  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 40653261 - 40653208
Alignment:
Q  187 tttggatttcattgtatatattgtgccttgaacaagttaaatcacatgtttggtct 242  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  40653261 tttggatttcatt--atatattgtgccttgaacaagttaaatcacatgtttggtct 40653208  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 22989727 - 22989613
Alignment:
Q  17 ataaatatcattgcaagaacatgcaaaaatttgattcctcannnnnnncaaagggtgaagaatatttggaggagattgaacatggtaga-ttttctctat 115  Q
    ||||| ||||||||||||||||||||||| |||||| ||||       ||||||||||||||||||||||||||| ||||   ||| || |||| |||||    
T  22989727 ataaaaatcattgcaagaacatgcaaaaacttgattactcatttttt-caaagggtgaagaatatttggaggagaatgaaggaggtggatttttgtctat 22989629  T
Q  116 ccgatgaaataaccat 131  Q
    || |||||||||||||    
T  22989628 cccatgaaataaccat 22989613  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 37903824 - 37903710
Alignment:
Q  17 ataaatatcattgcaagaacatgcaaaaatttgattcctcannnnnnncaaagggtgaagaatatttggaggagattgaacatggtaga-ttttctctat 115  Q
    ||||| ||||||||||||||||||||||| |||||| ||||       ||||||||||||||||||||||||||| ||||   ||| || |||| |||||    
T  37903824 ataaaaatcattgcaagaacatgcaaaaacttgattactcatttttc-caaagggtgaagaatatttggaggagaatgaaggaggtggatttttgtctat 37903726  T
Q  116 ccgatgaaataaccat 131  Q
    || |||||||||||||    
T  37903725 cccatgaaataaccat 37903710  T

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Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 32208330 - 32208556
Alignment:
Q  17 ataaatatcattgcaagaacatgcaaaaatttgattcctcannnnnnn-caaagggtgaagaatatttggaggagattgaacatggtagattttctctat 115  Q
    |||||||||||||||||||||||||||||||||||||||||        |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32208330 ataaatatcattgcaagaacatgcaaaaatttgattcctcattttttttcaaagggttaagaatatttggaggagattgaacatggtagattttctctat 32208429  T
Q  116 ccgatgaaataaccatatttcattcacaaatacatatgcataaggtatattttagcctttatattgcactgtttggatttcattgtatatattgtgcctt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  32208430 ccgatgaaataaccatatttcattcacaaatacatatgcataaggtatattttaccctttatattgcactgtttggatttcattatatatattgtgcctt 32208529  T
Q  216 gaacaagttaaatcacatgtttggtct 242  Q
    ||||||   ||||||||||||||||||    
T  32208530 gaacaaaccaaatcacatgtttggtct 32208556  T

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Target: scaffold0061 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 49959 - 50014
Alignment:
Q  187 tttggatttcattgtatatattgtgccttgaacaagttaaatcacatgtttggtct 242  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  49959 tttggatttcattatatatattgtgccttgaacaagttaaatcacatgtttggtct 50014  T

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Target: scaffold0061; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 49874 - 49910
Alignment:
Q  123 aataaccatatttcattcacaaatacatatgcataag 159  Q
    ||||||||||||||||||||||| |||||||||||||    
T  49874 aataaccatatttcattcacaaagacatatgcataag 49910  T

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Target: scaffold0017 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 148675 - 148620
Alignment:
Q  187 tttggatttcattgtatatattgtgccttgaacaagttaaatcacatgtttggtct 242  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  148675 tttggatttcattatatatattgtgccttgaacaagttaaatcacatgtttggtct 148620  T

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Target: scaffold0017; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 148760 - 148724
Alignment:
Q  123 aataaccatatttcattcacaaatacatatgcataag 159  Q
    ||||||||||||||||||||||| |||||||||||||    
T  148760 aataaccatatttcattcacaaagacatatgcataag 148724  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 34738544 - 34738489
Alignment:
Q  187 tttggatttcattgtatatattgtgccttgaacaagttaaatcacatgtttggtct 242  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34738544 tttggatttcattatatatattgtgccttgaacaagttaaatcacatgtttggtct 34738489  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 34738744 - 34738704
Alignment:
Q  17 ataaatatcattgcaagaacatgcaaaaatttgattcctca 57  Q
    ||||| ||||||||||||||||||||||| |||||| ||||    
T  34738744 ataaaaatcattgcaagaacatgcaaaaacttgattactca 34738704  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 18881133 - 18881246
Alignment:
Q  17 ataaatatcattgcaagaacatgcaaaaatttgattcctcannnnnnncaaagggtgaagaatatttggaggagattgaacatggtagattttctctatc 116  Q
    ||||| ||||||||||||||||||||||| |||||| ||||       ||||||||||||||||||||||||||| ||||    || |||||| ||||||    
T  18881133 ataaaaatcattgcaagaacatgcaaaaacttgattactcatttttt-caaagggtgaagaatatttggaggagaatgaaggatgtggattttgtctatc 18881231  T
Q  117 cgatgaaataaccat 131  Q
    | |||||||||||||    
T  18881232 ccatgaaataaccat 18881246  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 39621940 - 39622053
Alignment:
Q  17 ataaatatcattgcaagaacatgcaaaaatttgattcctcannnnnnncaaagggtgaagaatatttggaggagattgaacatggtagattttctctatc 116  Q
    ||||| ||||||||||||||||||||||| |||||| ||||       ||||||||||||||||||||||||||| ||||    || |||||| ||||||    
T  39621940 ataaaaatcattgcaagaacatgcaaaaacttgattactcatttttt-caaagggtgaagaatatttggaggagaatgaaggatgtggattttgtctatc 39622038  T
Q  117 cgatgaaataaccat 131  Q
    | |||||||||||||    
T  39622039 ccatgaaataaccat 39622053  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 39073049 - 39072935
Alignment:
Q  17 ataaatatcattgcaagaacatgcaaaaatttgattcctcannnnnnncaaagggtgaagaatatttggaggagattgaacatggtaga-ttttctctat 115  Q
    ||||| ||||||||||||||||||||||| |||||| ||||       ||||||||||||||||||||||||||| ||||   ||| || |||| |||||    
T  39073049 ataaaaatcattgcaagaacatgcaaaaacttgattactcatttttc-caaagggtgaagaatatttggaggagaatgaaggaggtggatttttgtctat 39072951  T
Q  116 ccgatgaaataaccat 131  Q
    || |||||||||||||    
T  39072950 cccatgaaataaccat 39072935  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 17026890 - 17026956
Alignment:
Q  17 ataaatatcattgcaagaacatgcaaaaatttgattcctcannnnnnncaaagggtgaagaatatttg 84  Q
    ||||| ||||||||||||||||||||||| |||||| ||||       ||||||||||||||||||||    
T  17026890 ataaaaatcattgcaagaacatgcaaaaacttgattactca-tttttccaaagggtgaagaatatttg 17026956  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 3744226 - 3744112
Alignment:
Q  17 ataaatatcattgcaagaacatgcaaaaatttgattcctcannnnnnncaaagggtgaagaatatttggaggagattgaacatggtaga-ttttctctat 115  Q
    ||||| ||||||||||||||||||||||| |||||| ||||       ||||||||||||||||||||||||||| ||||   ||| || |||| |||||    
T  3744226 ataaaaatcattgcaagaacatgcaaaaacttgattactcatttttc-caaagggtgaagaatatttggaggagaatgaaggaggtggatttttgtctat 3744128  T
Q  116 ccgatgaaataaccat 131  Q
    || |||||||||||||    
T  3744127 cccatgaaataaccat 3744112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 43267661 - 43267547
Alignment:
Q  17 ataaatatcattgcaagaacatgcaaaaatttgattcctcannnnnnncaaagggtgaagaatatttggaggagattgaacatggtaga-ttttctctat 115  Q
    ||||| ||||||||||||||||||||||| |||||| ||||       ||||||||||||||||||||||||||| ||||   ||| || |||| |||||    
T  43267661 ataaaaatcattgcaagaacatgcaaaaacttgattactcatttttc-caaagggtgaagaatatttggaggagaatgaaggaggtggatttttgtctat 43267563  T
Q  116 ccgatgaaataaccat 131  Q
    || |||||||||||||    
T  43267562 cccatgaaataaccat 43267547  T

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