View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_low_28 (Length: 250)
Name: NF10107_low_28
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 31060788 - 31060562
Alignment:
| Q |
11 |
agaacaagtttcattgaatgaaatcgataagtttttgataataactgtaaagggattattcaattacaactacaaattctttcagatccactaaaaataa |
110 |
Q |
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| T |
31060788 |
agaacaagtttcattgaaagtattcgataagtttttgataataactgtaaagggattattcaattacaactacaaattctttcagatccactaaaaataa |
31060689 |
T |
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| Q |
111 |
aggacaagatacatagcattggatggggtataactaagatcgagaaaagactacatggacttcgtcgtactcgatgatgtgaccaagtttgggaaattaa |
210 |
Q |
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| T |
31060688 |
aggacaagatacatagcattggatggggtataactaagatcgagaaaagactacatggacttcatcgtacttgatgatgtgaccaagtttgggaaattaa |
31060589 |
T |
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| Q |
211 |
aagccctgtgtgtaaattgtaagttct |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
31060588 |
aagccctgtgtgtaaattgtaagttct |
31060562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 8373689 - 8373540
Alignment:
| Q |
13 |
aacaagtttcattgaatgaaatcgataagtttttgataataactgtaaagggattattcaattacaactacaaattctttcagatccactaaaaataaag |
112 |
Q |
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| T |
8373689 |
aacaagtttcattgaaagtattcgagaagtttgtgattataatagaaaagggattattcatttacaggaacaacttctttcagatctcctaaaaacaaaa |
8373590 |
T |
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| Q |
113 |
gacaagatacatagcattggatggggtataactaagatcgagaaaagact |
162 |
Q |
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| T |
8373589 |
gataagatacatagcattgcagtggggataaataagatcgagaaaagact |
8373540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 31173964 - 31174115
Alignment:
| Q |
11 |
agaacaagtttcattgaatgaaatcgataagtttttgataataactgtaaagggattattcaattacaactacaaattctttcagatccactaaaaataa |
110 |
Q |
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|||||||||||| ||||| | | |||| |||||| ||||||||| | || |||| ||||||| ||||||| |||| |||||| ||||| || |||||| |
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| T |
31173964 |
agaacaagtttctttgaaagtattcgagaagtttgtgataataattctagaggggttattcatttacaacaacaacttcttttagatctcctgcaaataa |
31174063 |
T |
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| Q |
111 |
aggacaagatacatagcattggatggggtataactaagatcgagaaaagact |
162 |
Q |
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| T |
31174064 |
aacaagagattcatagcattgcattggggatgactaagatagagaaaagact |
31174115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 20810391 - 20810444
Alignment:
| Q |
174 |
gtcgtactcgatgatgtgaccaagtttgggaaattaaaagccctgtgtgtaaat |
227 |
Q |
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| T |
20810391 |
gtcgtactcgatgatgtgaccaagtctgagcaattaaaagctctgtgtgaaaat |
20810444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 20836746 - 20836799
Alignment:
| Q |
174 |
gtcgtactcgatgatgtgaccaagtttgggaaattaaaagccctgtgtgtaaat |
227 |
Q |
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||||||||||||||||||||||||| || | |||||||||| ||||||| |||| |
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| T |
20836746 |
gtcgtactcgatgatgtgaccaagtctgagcaattaaaagcactgtgtgcaaat |
20836799 |
T |
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