View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_low_30 (Length: 244)
Name: NF10107_low_30
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_low_30 |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 23037165 - 23037376
Alignment:
| Q |
15 |
cagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
23037165 |
cagagatattgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttaacccttttcag |
23037264 |
T |
|
| Q |
115 |
gcttaaaagctccaacgtgcagatttttcgtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttctgtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23037265 |
gcttaaaagctccaacgtgcagatttttcgtatctgtctccaataattaccgtacggagcaaaagctatacttgtggaattgtaagagattatttctgtt |
23037364 |
T |
|
| Q |
215 |
actagtatttga |
226 |
Q |
| |
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|||||||||||| |
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| T |
23037365 |
actagtatttga |
23037376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 23146925 - 23147115
Alignment:
| Q |
23 |
ttgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaa |
122 |
Q |
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||||||||| |||| |||||| |||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
23146925 |
ttgattggaattccgacctgtgaggcaatccatttggcaagattgaaaaacacttcttctctaattggttggtatgagttgaccctttttaggcttaaaa |
23147024 |
T |
|
| Q |
123 |
gctccaacgtgcagatttttcgtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttctgt |
213 |
Q |
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| T |
23147025 |
gctccagtgtgcagattttccgtagctgtctccaataattaccataaggagcaaaagctatacttgtggaattgtaagacattatttctgt |
23147115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 23040050 - 23040240
Alignment:
| Q |
23 |
ttgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaa |
122 |
Q |
| |
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||||||||| |||| | | |||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| |||||||| ||||| |||| |
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| T |
23040050 |
ttgattggaattccgtcccgtgaagcaatccatttgacaagattggaaaacacttcttctctaattggttgatatgagttaaccctttttaggctcaaaa |
23040149 |
T |
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| Q |
123 |
gctccaacgtgcagatttttcgtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttctgt |
213 |
Q |
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||||||| ||||| ||||| |||| |||||||||||||||||| || ||||||||||||||| |||| ||||||||||| ||||||||||| |
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| T |
23040150 |
gctccaatgtgcaaattttccgtagctgtctccaataattaccatacggagcaaaagctatatttgtagaattgtaagacattatttctgt |
23040240 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 38 - 226
Target Start/End: Original strand, 23033871 - 23034059
Alignment:
| Q |
38 |
ttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaagctccaacgtgcaga |
137 |
Q |
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||||| ||||||||| ||||||||||||||| | || ||||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||||| |
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| T |
23033871 |
ttctgcgaagcaatcgttttgacaagattggagaaaacctcttctcgtattggttggtacgagttgacccttttaaggcttaaaagctccaatgtgcaga |
23033970 |
T |
|
| Q |
138 |
tttttcgtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttctgttactagtatttga |
226 |
Q |
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||||||||| |||||||||||||||||| || |||| |||||||||| ||||||| |||||||| ||||||||||| |||| |||||| |
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| T |
23033971 |
tttttcgtaactgtctccaataattaccatacggagaaaaagctatatttgtggagttgtaagacattatttctgtagctaggatttga |
23034059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 23018259 - 23018443
Alignment:
| Q |
23 |
ttgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaa |
122 |
Q |
| |
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|||||||| | ||| |||| |||||||||| | |||| ||||||||| | || ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23018259 |
ttgattggcgatccattctctgaagcaatcgacttgataagattggagaaaacctcttctctaatcggttggtatgagttgaccctttttaggcttaaaa |
23018358 |
T |
|
| Q |
123 |
gctccaacgtgcagatttttcgtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattat |
207 |
Q |
| |
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||||||| ||||| ||||| ||| |||||||||||||| ||| ||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
23018359 |
gctccaatgtgcaaattttacgtgcctgtctccaataatcaccataaggagaaaaagagatacttgtggaattgtaagacattat |
23018443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 200
Target Start/End: Original strand, 23025297 - 23025453
Alignment:
| Q |
44 |
gaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaagctccaacgtgcagatttttc |
143 |
Q |
| |
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|||||||||||||||||||||||||| | | |||||||||||||||| ||||| |||||||| | ||| ||||| ||||||||||| ||||| ||||||| |
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| T |
23025297 |
gaagcaatccatttgacaagattggagaactcttcttctctaatcggctggtaggagttgacgcgttttaggctcaaaagctccaatgtgcaaatttttc |
23025396 |
T |
|
| Q |
144 |
gtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaag |
200 |
Q |
| |
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|| |||||||||||||||||| ||||||| | || |||||| |||||||||||||| |
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| T |
23025397 |
ttaactgtctccaataattaccataaggagaagaaactatacctgtggaattgtaag |
23025453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 207
Target Start/End: Original strand, 23149904 - 23150067
Alignment:
| Q |
44 |
gaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaagctccaacgtgcagatttttc |
143 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||||||||| || ||||| |||||||| | ||| ||||| ||||||||||| ||||| ||||||| |
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| T |
23149904 |
gaagcaatccatttgacaagattagagagctcttcttctctaattggctggtaagagttgacgcgttttaggctcaaaagctccaatgtgcaaatttttc |
23150003 |
T |
|
| Q |
144 |
gtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattat |
207 |
Q |
| |
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|| |||||||||||||||||| ||| |||| ||||||||| ||| ||||| ||||| ||||| |
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| T |
23150004 |
ttagctgtctccaataattaccacaagaagcagaagctatacctgtagaattataagaaattat |
23150067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 23141284 - 23141423
Alignment:
| Q |
34 |
tcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaagctccaacgtg |
133 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||| | | ||||||||||||| || |||||||||||||| | ||| ||||| ||||||||| | | |
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| T |
23141284 |
tcctttctttgaagttatccatttgacaagattggagaactcttcttctctaattggctggtatgagttgacgcgttttaggctcaaaagctccgaggca |
23141383 |
T |
|
| Q |
134 |
cagatttttcgtatctgtctccaataattaccgtaaggag |
173 |
Q |
| |
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|| ||||||| || |||||||||||||||||| ||||||| |
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| T |
23141384 |
caaatttttcttagctgtctccaataattaccataaggag |
23141423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 5514 - 5325
Alignment:
| Q |
22 |
attgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaa |
121 |
Q |
| |
|
||||||||| | ||| |||| ||||||||||||||||||||||| || || || |||||||| || |||||||| |||||||||||||| ||||||||| |
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| T |
5514 |
attgattggtgatccgttctctgaagcaatccatttgacaagatcagagagaacatcttctcttattggttggtaggagttgacccttttaaggcttaaa |
5415 |
T |
|
| Q |
122 |
agctccaacgtgcagatttttcgtatctgtctccaataattaccgtaaggagcaaaagctatacttgtggaattgtaagagattatttct |
211 |
Q |
| |
|
||||| || ||||| ||||||| || |||||||| ||||||||||||||||||||| |||| |||| |||||||||| ||||||||| |
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|
| T |
5414 |
agctcgaatgtgcatatttttcttacttgtctccagtaattaccgtaaggagcaaaaattatatttgttgaattgtaagtcattatttct |
5325 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 21780940 - 21781090
Alignment:
| Q |
23 |
ttgattggagttcctttctgtgaagcaatccatttgacaagattggaaagcacttcttctctaatcggttggtatgagttgacccttttcaggcttaaaa |
122 |
Q |
| |
|
|||||||| | ||| ||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||| |||||||||| |
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| T |
21780940 |
ttgattggcgatccattctgtgaaacaatccatctgacaagattggagagcacctcttctctaatcggttggtgtgagttgactcttttaaggcttaaaa |
21781039 |
T |
|
| Q |
123 |
gctccaacgtgcagatttttcgtatctgtctccaataattaccgtaaggag |
173 |
Q |
| |
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|||| || |||||||||||||||| |||| |||| || || || ||||||| |
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| T |
21781040 |
gctctaatgtgcagatttttcgtagctgtttccagtagttgccataaggag |
21781090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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