View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_low_31 (Length: 243)
Name: NF10107_low_31
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 44904083 - 44903915
Alignment:
| Q |
1 |
tgcagaaaaggttcacttcattcgtaacctttttaagctctgaacattcacatgtagagtcgatactcaatacaatttgatattggattttaaatctatt |
100 |
Q |
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| T |
44904083 |
tgcagaaaaggttcacttcattcgtaacctttttaagctctgaacattcacatgtagagtcgatactcaatacaatttgatattggattttaaatctatt |
44903984 |
T |
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| Q |
101 |
tctttgagcatataattgttataatctttggtatcacctgtttcacataaaaagatccattcaagacca |
169 |
Q |
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| T |
44903983 |
tctttgaccatataattgttataatctttggtatcacctgtttcacataaaaagatccattcaagacca |
44903915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 44898155 - 44898267
Alignment:
| Q |
1 |
tgcagaaaaggttcacttcattcgtaacctttttaagctctgaacattcacatgtagagtcgatactcaatacaatttgatattggattttaaatctatt |
100 |
Q |
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| T |
44898155 |
tgcagaaaaggttcacttcattcataacctctttaagttcttaacattcacatgtagagtc-------aatacaatttgatattggattttaaatctatt |
44898247 |
T |
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| Q |
101 |
tctttgagcatataattgtt |
120 |
Q |
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|||| ||||||||||||||| |
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| T |
44898248 |
tcttcgagcatataattgtt |
44898267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 44903856 - 44903807
Alignment:
| Q |
177 |
atgctataccaagagaagatgctggtgcattcgtctttcaccgcgtactt |
226 |
Q |
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| T |
44903856 |
atgctataccaagagaagatgctggtacattcgtctttcaccgcgtactt |
44903807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 44917328 - 44917279
Alignment:
| Q |
177 |
atgctataccaagagaagatgctggtgcattcgtctttcaccgcgtactt |
226 |
Q |
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| T |
44917328 |
atgctataccaagagaagatgctggtgcatttgtctttcaccgcgtactt |
44917279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 44917430 - 44917387
Alignment:
| Q |
126 |
ctttggtatcacctgtttcacataaaaagatccattcaagacca |
169 |
Q |
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| T |
44917430 |
ctttggtatcacctgtttcacataaaaagatccattcaagacca |
44917387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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