View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_low_34 (Length: 240)
Name: NF10107_low_34
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 31718629 - 31718852
Alignment:
| Q |
1 |
taatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatgcaggtatccttttttagcaaacttcaaacttataacaagaaacctgcg |
100 |
Q |
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| T |
31718629 |
taatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatgcaggtatccttttttagcaaacttcaaacttataacaagaaacctgcg |
31718728 |
T |
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| Q |
101 |
agatctagcacggttaatgattaataatcattgtttattttgtgtgtttttgtcttgactttcattgtggtaaggatatgagatttggattacacctttt |
200 |
Q |
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| T |
31718729 |
agatctagcacggttactgattaataatgattgtttattttgtgtgtttttgtcttgactttcattgtggtaaggatatgagatttggattacacctttt |
31718828 |
T |
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| Q |
201 |
cagttgtattaaaacattgttaat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
31718829 |
cagttgtattaaaacattgttaat |
31718852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 31710073 - 31710194
Alignment:
| Q |
1 |
taatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatgcaggta-tccttttttagcaaacttcaaacttataacaagaaacctgc |
99 |
Q |
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|||||||||| ||||||||||||||| |||| | |||||||||||||| ||||||||| | ||||||||||| |||| || |||||||||||||||| |
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| T |
31710073 |
taatccattaattgggtggatgcatggagctcagatggttgcatttaacatgcaggtactgtttttttagcaagcttc-aatatataacaagaaacctgt |
31710171 |
T |
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| Q |
100 |
gagatctagcacggttaatgatt |
122 |
Q |
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||| |||||||||| || ||||| |
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| T |
31710172 |
gaggtctagcacggctactgatt |
31710194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 31011263 - 31011147
Alignment:
| Q |
1 |
taatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatgcaggta-----tccttttttagcaaacttcaaacttataacaagaaac |
95 |
Q |
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|||||||||| |||| |||||||||| |||| | |||||||||||||| ||||||||| | ||||||||||| |||| || ||||||||||||| |
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| T |
31011263 |
taatccattaattggttggatgcatggagctcagatggttgcatttaacatgcaggtattttttatttttttagcaagcttc-aatatataacaagaaac |
31011165 |
T |
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| Q |
96 |
ctgcgagatctagcacgg |
113 |
Q |
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||| ||| |||||||||| |
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| T |
31011164 |
ctgtgaggtctagcacgg |
31011147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 31710222 - 31710286
Alignment:
| Q |
117 |
atgattaataatcattgtttattttgtgtgtttttgtcttgactttcattgtggtaaggatatgaga |
183 |
Q |
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|||||| ||||||||||||||||| ||| ||||||||||||||||| |||||| ||||| ||||| |
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| T |
31710222 |
atgatttataatcattgtttatttcgtgc--ttttgtcttgactttcactgtggtgaggatgtgaga |
31710286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 35552275 - 35552331
Alignment:
| Q |
1 |
taatccattagttgggtggatgcatgaagctaaaatggttgcatttaatatgcaggt |
57 |
Q |
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|||||||||| |||||||||| |||| |||| ||||||||||||| || |||||||| |
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| T |
35552275 |
taatccattaattgggtggattcatggagctcaaatggttgcattcaacatgcaggt |
35552331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 30100388 - 30100428
Alignment:
| Q |
17 |
tggatgcatgaagctaaaatggttgcatttaatatgcaggt |
57 |
Q |
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| T |
30100388 |
tggatgcatggagctcaaatggtagcatttaatatgcaggt |
30100428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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