View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_low_35 (Length: 239)
Name: NF10107_low_35
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_low_35 |
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| [»] scaffold0068 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 207
Target Start/End: Complemental strand, 32095046 - 32094854
Alignment:
| Q |
15 |
gaacagaatagtcgacagtttcgacacataacataatccattgtggagaaaatcccatttttccatgatttctcgaaggtagttccactcaattctttcg |
114 |
Q |
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| T |
32095046 |
gaacagaatagtcgacagtttcgacacataacataatccattgtggagaaaatcccatttttccatgatttctcgaaggtagttccactcaattctttcg |
32094947 |
T |
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| Q |
115 |
taagctttactgatatcaagtttaagagccacttctcccaattttcctttaaccttagacttcatatgatggataatttctattggtgtcatt |
207 |
Q |
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| T |
32094946 |
taagctttactgatataaagtttaagagccacttctctcaattttcctttaaccttagacttcatatgatggataatttctattggtgtcatt |
32094854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 154
Target Start/End: Original strand, 46390048 - 46390184
Alignment:
| Q |
19 |
agaatagtcgacagtttcgacacataacataatccattgtggagaaaatcccatttt-tccatgatttctcgaaggtagttccactcaattctttcgtaa |
117 |
Q |
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| T |
46390048 |
agaatagtcgacagtttcgacacacaccattatccattgttgagaaaagcccattttatccataacctctcgaagataattccattcgatcctgtcataa |
46390147 |
T |
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| Q |
118 |
gctttactgatatcaagtttaagagccacttctccca |
154 |
Q |
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| T |
46390148 |
gctttactaatatcaagcttaagagccacttctccca |
46390184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 48211368 - 48211263
Alignment:
| Q |
50 |
atccattgtggagaaaatcccatttt-tccatgatttctcgaaggtagttccactcaattctttcgtaagctttactgatatcaagtttaagagccactt |
148 |
Q |
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||||||||| |||||| |||||||| ||||| | | |||||| || ||||| || || || || ||||||||||| |||||||| ||||||||||||| |
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| T |
48211368 |
atccattgttcagaaaagcccattttatccataacctgtcgaagataattccattcgatcctgtcataagctttactaatatcaagcttaagagccactt |
48211269 |
T |
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| Q |
149 |
ctccca |
154 |
Q |
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|||||| |
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| T |
48211268 |
ctccca |
48211263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 11701 - 11806
Alignment:
| Q |
50 |
atccattgtggagaaaatcccatttt-tccatgatttctcgaaggtagttccactcaattctttcgtaagctttactgatatcaagtttaagagccactt |
148 |
Q |
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||||||||| |||||| |||||||| ||||| | | |||||| || ||||| || || || || ||||||||||| |||||||| ||||||||||||| |
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| T |
11701 |
atccattgttcagaaaagcccattttatccataacctgtcgaagataattccattcgatcctgtcataagctttactaatatcaagcttaagagccactt |
11800 |
T |
|
| Q |
149 |
ctccca |
154 |
Q |
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|||||| |
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| T |
11801 |
ctccca |
11806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 21702209 - 21702104
Alignment:
| Q |
50 |
atccattgtggagaaaatcccatttt-tccatgatttctcgaaggtagttccactcaattctttcgtaagctttactgatatcaagtttaagagccactt |
148 |
Q |
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||||||||| |||||| |||||||| ||||| | | |||||| || ||||| || || || || ||||||||||| |||||||| ||||||||||||| |
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| T |
21702209 |
atccattgttcagaaaagcccattttatccataacctgtcgaagataattccattcgatcctgtcataagctttactaatatcaagcttaagagccactt |
21702110 |
T |
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| Q |
149 |
ctccca |
154 |
Q |
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|||||| |
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| T |
21702109 |
ctccca |
21702104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 23266593 - 23266702
Alignment:
| Q |
88 |
cgaaggtagttccactcaattctttcgtaagctttactgatatcaagtttaagagccacttctcccaattttcctttaaccttagacttcatatgatgga |
187 |
Q |
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||||| ||||||||||||||| | || || ||||| || ||||||||||| |||||||||||||| | || | || || || |||||||||||||| | |
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| T |
23266593 |
cgaagatagttccactcaattttgtcatatgctttgctaatatcaagtttcagagccacttctccaacgttatccttgactttcgacttcatatgatgta |
23266692 |
T |
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| Q |
188 |
taatttctat |
197 |
Q |
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| |||||||| |
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| T |
23266693 |
ttatttctat |
23266702 |
T |
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