View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_low_36 (Length: 238)
Name: NF10107_low_36
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 71 - 227
Target Start/End: Complemental strand, 7143740 - 7143584
Alignment:
| Q |
71 |
attgtcctgtactaggtggtgttccagaaaggttgttgtaagacacattgaagatatccataaaggtcaagtgacttagttgagaaggtaccttaccatt |
170 |
Q |
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| T |
7143740 |
attgtcctatactaggtggtgttccagaaaggttgttgtaagacacattgaagatatctataaaggtcaagtgacttagttgagaagctaccttaccatt |
7143641 |
T |
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| Q |
171 |
caagttactttatgataagtcaagactctctatttgggtaagattggaaaaagtgat |
227 |
Q |
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| T |
7143640 |
caagttactctatgataagtcaagactctctatttgggtaagattggaaaaagtgat |
7143584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 63 - 227
Target Start/End: Original strand, 4840979 - 4841143
Alignment:
| Q |
63 |
gcctccgaattgtcctgtactaggtggtgttccagaaaggttgttgtaagacacattgaagatatccataaaggtcaagtgacttagttgagaaggtacc |
162 |
Q |
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| T |
4840979 |
gcctccaaattgtcctgtactaggtggtgttccagagaggttgttgtatgacacattgaagatttctaaaaagttcaactgggttagttcatttggtatc |
4841078 |
T |
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| Q |
163 |
ttaccattcaagttactttatgataagtcaagactctctatttgggtaagattggaaaaagtgat |
227 |
Q |
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| T |
4841079 |
ttaccactcaagttattgtatgataagtcaagactctctatttgggtaagatttgaaaaagtgat |
4841143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 4855495 - 4855646
Alignment:
| Q |
73 |
tgtcctgtactaggtggtgttccagaaaggttgttgtaagacacattgaagatatccataaaggtcaagtgacttagttgagaaggtaccttaccattca |
172 |
Q |
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| T |
4855495 |
tgtcctgtactaggtggtgttccagaaaggttgttgtatgacacattgaatatttctaaagaggtcaacttggttagttcataaggtatcttaccactca |
4855594 |
T |
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| Q |
173 |
agttactttatgataagtcaagactctctatttgggtaagattggaaaaagt |
224 |
Q |
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| T |
4855595 |
agttattgtatgataagtcaaggctttctatttgggtaagatttgaaaaagt |
4855646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 227
Target Start/End: Complemental strand, 5174543 - 5174379
Alignment:
| Q |
63 |
gcctccgaattgtcctgtactaggtggtgttccagaaaggttgttgtaagacacattgaagatatccataaaggtcaagtgacttagttgagaaggtacc |
162 |
Q |
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| T |
5174543 |
gcctccaaattgtcctgtactaggtggtgttccagaaaggttgttgtatgacacattgaaggttgacaaaaagtttagctgggttagttcattgggtatc |
5174444 |
T |
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| Q |
163 |
ttaccattcaagttactttatgataagtcaagactctctatttgggtaagattggaaaaagtgat |
227 |
Q |
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| T |
5174443 |
ttaccactcaagtcattgtatgataagtcaagactctctatttgggtaagatttgaaaaagtgat |
5174379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 5183878 - 5183724
Alignment:
| Q |
70 |
aattgtcctgtactaggtggtgttccagaaaggttgttgtaagacacattgaagatatccataaaggtcaagtgacttagttgagaaggtaccttaccat |
169 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| || | | ||||||| | |||||| | |||| | ||||||| |
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| T |
5183878 |
aattgtcttgtgctaggtggtgttccagaaaggttgttgtatgacacattgaagatttctaaagaggtcaacttggttagttcataaggaatcttaccac |
5183779 |
T |
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| Q |
170 |
tcaagttactttatgataagtcaagactctctatttgggtaagattggaaaaagt |
224 |
Q |
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| T |
5183778 |
tcaagttattgtatgataagtcaaggctctctatttgggtaagttttgaaaaagt |
5183724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 5161592 - 5161444
Alignment:
| Q |
73 |
tgtcctgtactaggtggtgttccagaaaggttgttgtaagacacattgaagatatccataaaggtcaagtgacttagttgagaaggtaccttaccattca |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||| | | ||||||||| || |||| | | |||||| ||||||| ||| |
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| T |
5161592 |
tgtcctgtactaggtggtgttccagaaaggttgttgtatgacacgttgaaggttgataaaaaggtcaactgggttagctcataaggtatcttaccactca |
5161493 |
T |
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| Q |
173 |
agttactttatgataagtcaagactctctatttgggtaagattggaaaa |
221 |
Q |
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| T |
5161492 |
agttattgtatgataagtcaaggctctctatttcggtaagatttgaaaa |
5161444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 224
Target Start/End: Complemental strand, 5215428 - 5215268
Alignment:
| Q |
64 |
cctccgaattgtcctgtactaggtggtgttccagaaaggttgttgtaagacacattgaagatatccataaaggtcaagtgacttagttgagaaggtacct |
163 |
Q |
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| T |
5215428 |
cctccaaactgtcctgtactaggtggtgttccagaaaagttgttgtatgatacattgaaggttgataaaaagttcaactgggttagttcatttggtatct |
5215329 |
T |
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| Q |
164 |
taccattcaagttactttatgataagtcaagactctctatttgggtaagattggaaaaagt |
224 |
Q |
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||||| |||||||| | |||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
5215328 |
taccactcaagttattgtatgataagtcaaggctctctatttgggtaagatttgaaaaagt |
5215268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 227
Target Start/End: Complemental strand, 5197267 - 5197120
Alignment:
| Q |
80 |
tactaggtggtgttccagaaaggttgttgtaagacacattgaagatatccataaaggtcaagtgacttagttgagaaggtaccttaccattcaagttact |
179 |
Q |
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| T |
5197267 |
tactaggtggtgttccagaaaggttgttgtatgacacattgaaggttgacaaaaagtttagctgggttagttcattgggtatcttaccactcaagtcatt |
5197168 |
T |
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| Q |
180 |
ttatgataagtcaagactctctatttgggtaagattggaaaaagtgat |
227 |
Q |
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| T |
5197167 |
gtatgataagtcaagactctctatttgggtaagatttgaaaaagtgat |
5197120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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