View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_low_38 (Length: 236)
Name: NF10107_low_38
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 31334286 - 31334482
Alignment:
| Q |
1 |
acaatattttttgcaaaagttacactttatacggctgtaataaaattacaatgtcaacgtgtttctgacaaactcatgctgacaaaataaaagatcacca |
100 |
Q |
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| T |
31334286 |
acaatattttttgcaaaagttacactttatacggctgtaataaaattacaatgtcaacgtgtttctgtcaaactc-----gacaaaataaaagatcacca |
31334380 |
T |
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| Q |
101 |
aattatggtaatgtgaactcatgcttgattatcaattataagttgtaataatatcttacaaatatataaattttatgtatgagatggaagtttcatattc |
200 |
Q |
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| T |
31334381 |
aattatggtaatgtgaactcatgtttgattatcaattataaattgtaataatatcttacaaaaatataaattttatgtatgagataggagtttcatattc |
31334480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 216
Target Start/End: Original strand, 31322102 - 31322250
Alignment:
| Q |
69 |
caaactcatgctgacaaaataaaagatcaccaaattatggtaatgtgaactcatgcttgat----tatcaattataagttgtaataatatcttacaaata |
164 |
Q |
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|||||||| | |||||||||||||||| | |||||||||||||||| ||||||| ||||| |||||| ||||||||||||| ||||||| ||||| |
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| T |
31322102 |
caaactcacggtgacaaaataaaagattgctaaattatggtaatgtgtactcatgtttgattatatatcaaatataagttgtaatcatatcttcaaaata |
31322201 |
T |
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| Q |
165 |
tataaattttatgtatgagatggaagtttcatattcaagcatctttgtgttg |
216 |
Q |
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| T |
31322202 |
t-ttaactttatg--tgagatggatgtttcatgttcaagcatcattgtgttg |
31322250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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