View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10107_low_39 (Length: 228)

Name: NF10107_low_39
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10107_low_39
NF10107_low_39
[»] chr3 (1 HSPs)
chr3 (1-204)||(1153841-1154044)
[»] chr5 (11 HSPs)
chr5 (1-204)||(35410768-35410971)
chr5 (1-204)||(35754909-35755112)
chr5 (1-204)||(35386107-35386310)
chr5 (1-204)||(35366955-35367158)
chr5 (64-195)||(35376570-35376701)
chr5 (64-195)||(35423829-35423960)
chr5 (150-196)||(35437257-35437303)
chr5 (152-196)||(10716903-10716947)
chr5 (152-196)||(10746978-10747022)
chr5 (152-196)||(10740662-10740706)
chr5 (152-196)||(10763096-10763140)
[»] chr7 (1 HSPs)
chr7 (1-204)||(29623020-29623223)
[»] chr1 (3 HSPs)
chr1 (1-203)||(10420467-10420669)
chr1 (1-204)||(10415579-10415782)
chr1 (164-203)||(10409883-10409922)
[»] chr2 (3 HSPs)
chr2 (1-196)||(30663117-30663312)
chr2 (1-196)||(30671797-30671992)
chr2 (1-196)||(30626166-30626361)
[»] chr6 (2 HSPs)
chr6 (152-196)||(12899772-12899816)
chr6 (152-196)||(12958280-12958324)
[»] scaffold0692 (1 HSPs)
scaffold0692 (152-196)||(7495-7539)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 1153841 - 1154044
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  1153841 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacaaaaagggtagattttgctcttg 1153940  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1153941 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 1154040  T
Q  201 agcc 204  Q
    ||||    
T  1154041 agcc 1154044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 35410768 - 35410971
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    ||||| |||||||| |||| |||||||||| | ||||||||||  ||||||||||||||||| |||||||| |||||||||||| ||||  || ||||||    
T  35410768 gagttaatgcctaatgggaatctagaaaagtttttgcatgataacgaagggtctgaaaatcataatctcaacctcacacaaaggttagacattgctcttg 35410867  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    || |||||||||||||||||| |||||||||||| ||| |||||| |  ||||||||||||| ||||||| ||||| ||||||||||| ||||||  |||    
T  35410868 atgtagctcatgcacttgattatcttcacaatgagacagagcaagctgtagttcactgtgatcttaagccgagcaacgttcttcttgacgatgactttgt 35410967  T
Q  201 agcc 204  Q
    ||||    
T  35410968 agcc 35410971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 35754909 - 35755112
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    ||||||||| | || |||||||| |||||| ||||||| |||| ||||||||| | ||||   |||||||| |||||||||||| ||||  || ||||||    
T  35754909 gagttcatgtcaaatgggagtcttgaaaagttgttgcacgataatgaagggtcaggaaattttaatctcaacctcacacaaaggttagacattgctcttg 35755008  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    || ||||||||||| | |||| |||||||||||||||| | |||||   ||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  35755009 atgtagctcatgcattggattatcttcacaatgatacagaacaagtcgtagttcactgtgatattaagccaagcaatgttcttcttgatgatgaaattgt 35755108  T
Q  201 agcc 204  Q
    ||||    
T  35755109 agcc 35755112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 35386107 - 35386310
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    ||||||||| | || | |||||| |||||| | |||||  ||| |||||||||||||||||| |||||||| |||||| ||||| ||||  || ||||||    
T  35386107 gagttcatgtcaaatgagagtcttgaaaagtttttgcacaataatgaagggtctgaaaatcataatctcaacctcacataaaggttagacattgctcttg 35386206  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    || |||||||||||||||||| |||||||||||||||| ||||||    ||||||||||||| ||||||||||||| ||||||||||| ||||||  |||    
T  35386207 atgtagctcatgcacttgattatcttcacaatgatacagagcaagccgtagttcactgtgatcttaagccaagcaacgttcttcttgacgatgactttgt 35386306  T
Q  201 agcc 204  Q
    ||||    
T  35386307 agcc 35386310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 35366955 - 35367158
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    |||||||||||||| || |||||||||||| |  |||||||||  |||||||||| |||||| |||||||  |||| ||| || || ||  || ||||||    
T  35366955 gagttcatgcctaagggaagtctagaaaagcttctgcatgataacgaagggtctggaaatcataatctcagcctcagacacagagttgacattgctcttg 35367054  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    || ||||||||||||| |||| ||||||||||| |||| || ||   | ||||||||||||||||||||| ||||| |||||||| || ||||||| |||    
T  35367055 atgtagctcatgcactcgattatcttcacaatggtacagagaaatccatagttcactgtgatattaagccgagcaacgttcttctggacgatgacactgt 35367154  T
Q  201 agcc 204  Q
    ||||    
T  35367155 agcc 35367158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 35376570 - 35376701
Alignment:
Q  64 aatctcaagctcacacaaagggtagatttttctcttgatatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgata 163  Q
    ||||||||  ||||||||||| ||||  || |||| ||  ||||||||||| | |||| |||||||||||||||| ||||||||  |||||| ||||||     
T  35376570 aatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatg 35376669  T
Q  164 ttaagccaagcaatgttcttcttgatgatgac 195  Q
    ||||||||||||||||||||||||||||||||    
T  35376670 ttaagccaagcaatgttcttcttgatgatgac 35376701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 195
Target Start/End: Original strand, 35423829 - 35423960
Alignment:
Q  64 aatctcaagctcacacaaagggtagatttttctcttgatatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgata 163  Q
    ||||||||  ||||||||||| ||||  || |||| ||  ||||||||||| | |||| |||||||||||||||| ||||||||  |||||| ||||||     
T  35423829 aatctcaatttcacacaaaggttagacattgctctcgacgtagctcatgcattggattatcttcacaatgatacagagcaagttgtagttcattgtgatg 35423928  T
Q  164 ttaagccaagcaatgttcttcttgatgatgac 195  Q
    |||| |||||||||||||||||||||||||||    
T  35423929 ttaaaccaagcaatgttcttcttgatgatgac 35423960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 35437257 - 35437303
Alignment:
Q  150 agttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    |||||||||||||||||||||||| ||||||||||| || |||||||    
T  35437257 agttcactgtgatattaagccaagtaatgttcttctcgacgatgaca 35437303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 10716947 - 10716903
Alignment:
Q  152 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    |||| |||||| |||||||||||||||| ||||||||||||||||    
T  10716947 ttcattgtgatcttaagccaagcaatgtccttcttgatgatgaca 10716903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 10747022 - 10746978
Alignment:
Q  152 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||    
T  10747022 ttcactgtgatctcaagccaagcaatgtccttcttgatgatgaca 10746978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 10740706 - 10740662
Alignment:
Q  152 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    |||| |||||| | |||||||||||||| ||||||||||||||||    
T  10740706 ttcattgtgatctaaagccaagcaatgtccttcttgatgatgaca 10740662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 10763140 - 10763096
Alignment:
Q  152 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    |||| |||||| | |||||||||||||| ||||||||||||||||    
T  10763140 ttcattgtgatctaaagccaagcaatgtccttcttgatgatgaca 10763096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 29623223 - 29623020
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    ||||||||||||||   ||||||||||||||||||||| |||| |||||| |||| ||  || |||||||| |||||||||||| ||||  || ||||||    
T  29623223 gagttcatgcctaatatgagtctagaaaagatgttgcacgataatgaaggatctggaagccataatctcaacctcacacaaaggatagacattgctcttg 29623124  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    || ||||||||||| | |||| |||||||||||||| | | |||| |  ||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  29623123 atgtagctcatgcattggattatcttcacaatgatatagaacaagctgtagttcactgtgatgttaagccaagcaatgttcttcttgatgatgacattgt 29623024  T
Q  201 agcc 204  Q
    ||||    
T  29623023 agcc 29623020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 10420669 - 10420467
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    |||||||||||||| ||||||||||||||| |  |||| ||||  |||||||||| || ||| |||||||  |||| ||||||||| ||  || ||||||    
T  10420669 gagttcatgcctaaggggagtctagaaaagcttctgcacgataaagaagggtctggaattcataatctcagcctcagacaaagggttgacattgctcttg 10420570  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    || |||||||||||||| ||| ||||||||||| |||| ||||||  | ||||||||||||||||||||| ||||| |||||||| || ||||||| |||    
T  10420569 atgtagctcatgcacttaattatcttcacaatggtacagagcaagccatagttcactgtgatattaagccgagcaacgttcttctggacgatgacattgt 10420470  T
Q  201 agc 203  Q
    |||    
T  10420469 agc 10420467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 10415782 - 10415579
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    |||||||||||||| |||||||| ||||||||  |||| ||||  |||||||||| || ||| |||||||  ||  |||||||| ||||  |  ||||||    
T  10415782 gagttcatgcctaaggggagtctggaaaagattctgcacgataacgaagggtctggaattcataatctcagcctggcacaaaggttagacatcgctcttg 10415683  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgacaatgt 200  Q
    || |||||||||||||||||| |||||||||||||||| ||||||    ||||||||||||| ||||| ||||||| ||||||||||| ||||||  |||    
T  10415682 atctagctcatgcacttgattatcttcacaatgatacagagcaagccgtagttcactgtgatgttaagtcaagcaacgttcttcttgacgatgacgttgt 10415583  T
Q  201 agcc 204  Q
    ||||    
T  10415582 agcc 10415579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 10409922 - 10409883
Alignment:
Q  164 ttaagccaagcaatgttcttcttgatgatgacaatgtagc 203  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  10409922 ttaaaccaagcaatgttcttctcgatgatgacaatgtagc 10409883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 30663117 - 30663312
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    |||||||||||||| ||||||||||||||| |  |||| ||||  |||| ||||| || ||| |||||||  |||||||||||||| ||  || ||||||    
T  30663117 gagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaagagtctggaattcataatctcagcctcacacaaagggttgacattgctcttg 30663216  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    || ||||||||||| | |||| ||||||||||| |||  || | |||  ||||||||||||| | || |||| |||||||||||||||||||||||    
T  30663217 atgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcactgtgatgtgaaaccaaacaatgttcttcttgatgatgaca 30663312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 30671797 - 30671992
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    |||||||||||||| ||||||||||||||| |  |||| ||||  |||| ||||| || ||| |||||||  |||||||||||||| ||  || ||||||    
T  30671797 gagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaagagtctggaattcataatctcagcctcacacaaagggttgacattgctcttg 30671896  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    || ||||||||||| | |||| ||||||||||| |||  || | |||  ||||||||||||| | || |||| |||||||||||||||||||||||    
T  30671897 atgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcactgtgatgtgaaaccaaacaatgttcttcttgatgatgaca 30671992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 30626166 - 30626361
Alignment:
Q  1 gagttcatgcctaacgggagtctagaaaagatgttgcatgatattgaagggtctgaaaatcacaatctcaagctcacacaaagggtagatttttctcttg 100  Q
    |||||||||||||| ||||||||||||||| |  |||| ||||  |||| ||||| || ||| |||||||  |||||||||||||| ||  || ||||||    
T  30626166 gagttcatgcctaaggggagtctagaaaagcttctgcacgataacgaagagtctggaattcataatctcagcctcacacaaagggttgacattgctcttg 30626265  T
Q  101 atatagctcatgcacttgattttcttcacaatgatacaaagcaagttacagttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    || ||||||||||| | |||| ||||||||||| |||  || | |||  |||||| |||||| | || |||| |||||||||||||||||||||||    
T  30626266 atgtagctcatgcattggattatcttcacaatggtactgagaatgttgtagttcaatgtgatgtgaaaccaaacaatgttcttcttgatgatgaca 30626361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 12899772 - 12899816
Alignment:
Q  152 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||    
T  12899772 ttcattgtgatataaagccaagcaatgtccttcttgatgatgaca 12899816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 12958280 - 12958324
Alignment:
Q  152 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    ||||||||||| | |||||||||||||| |||||||||| |||||    
T  12958280 ttcactgtgatctaaagccaagcaatgtccttcttgatggtgaca 12958324  T

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Target: scaffold0692 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 7495 - 7539
Alignment:
Q  152 ttcactgtgatattaagccaagcaatgttcttcttgatgatgaca 196  Q
    |||| |||||| | |||||||||||||| ||||||||||||||||    
T  7495 ttcattgtgatctaaagccaagcaatgtccttcttgatgatgaca 7539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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