View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10107_low_40 (Length: 227)
Name: NF10107_low_40
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10107_low_40 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45467233 - 45467007
Alignment:
| Q |
1 |
taataaggaacaccactagcagcagcaccaacaatagcagcagcaccttcatctttaatctcatctctcggaacaatatcaaccnnnnnnnnnnnnntat |
100 |
Q |
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| T |
45467233 |
taataaggaacaccactagcagcagcaccaacaatagcagcagcaccttcatctttaatctcatctctcggaacaatatcaaccaaaaaatcaaaaatat |
45467134 |
T |
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| Q |
101 |
cagtcctagtaatagcagcagcaatatcatttttctgaagagttcgtcgtttattctcttcagcatgaagccaagaacgaatggtgagttcaagaatgaa |
200 |
Q |
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| T |
45467133 |
cagtcctagtaatagcagcagcaatatcatttttctgaagagttcgtcgtttattctcttcagcatgaagccaagaacgaatggtgagttcaagaatgaa |
45467034 |
T |
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| Q |
201 |
aagctcacaagctttagcaaagagaat |
227 |
Q |
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| T |
45467033 |
aagctcacaagctttagcaaagagaat |
45467007 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 46851644 - 46851686
Alignment:
| Q |
98 |
tatcagtcctagtaatagcagcagcaatatcatttttctgaag |
140 |
Q |
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| T |
46851644 |
tatcagtcctagtgattgcagcagcaatatcattcttctgaag |
46851686 |
T |
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