View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10107_low_41 (Length: 227)

Name: NF10107_low_41
Description: NF10107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10107_low_41
NF10107_low_41
[»] chr2 (2 HSPs)
chr2 (4-189)||(16466335-16466520)
chr2 (91-131)||(42090176-42090216)
[»] chr4 (2 HSPs)
chr4 (31-188)||(26426757-26426913)
chr4 (31-154)||(46830744-46830867)
[»] chr5 (2 HSPs)
chr5 (31-188)||(42145625-42145781)
chr5 (31-188)||(40791708-40791864)
[»] scaffold0237 (1 HSPs)
scaffold0237 (31-154)||(25510-25633)
[»] chr6 (1 HSPs)
chr6 (31-154)||(29885959-29886082)
[»] chr1 (2 HSPs)
chr1 (31-154)||(31933031-31933154)
chr1 (31-154)||(42850917-42851040)
[»] chr3 (1 HSPs)
chr3 (31-151)||(3347490-3347610)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 16466335 - 16466520
Alignment:
Q  4 accctcaaaagcacgtttccagcactccaccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaatt 103  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16466335 accctcaaaagcacgtttcctgcactccaccgtagtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaatt 16466434  T
Q  104 ctatgagaagctacgaatccaagcttctacggtgaggctagaatcaattcttccattgtatttaactgacggttagataactcacc 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16466435 ctatgagaagctacgaatccaagcttctacggtgaggctagaatcaattcttccattgtatttaactgacagttagataactcacc 16466520  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 42090216 - 42090176
Alignment:
Q  91 tccaaaatcaattctatgagaagctacgaatccaagcttct 131  Q
    ||||||||||||||||||||||||| | ||||| |||||||    
T  42090216 tccaaaatcaattctatgagaagctccaaatcctagcttct 42090176  T

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Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 26426913 - 26426757
Alignment:
Q  31 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 130  Q
    |||||||||||||||||||| |||||||||| ||||  |||||||||| ||||| | || ||||||||||||||||||||||||||| ||||  ||||||    
T  26426913 caccgtggtttctttattttccatcatgtttggttttcttttctaaaagtgattttgtcttccaaaatcaattctatgagaagctacaaatctcagcttc 26426814  T
Q  131 tacggtgaggctagaatcaattcttccattgtatttaactgacggttagataactcac 188  Q
    | ||||| |||||||||||||||||| ||| ||||||||||||  ||| |||||||||    
T  26426813 tgcggtg-ggctagaatcaattcttctattatatttaactgacatttatataactcac 26426757  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 46830867 - 46830744
Alignment:
Q  31 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 130  Q
    ||||||||||| || | |||||| ||||||| ||| | ||||| | |||  |||| | | ||||||||||||||||  | ||||||| ||||  ||||||    
T  46830867 caccgtggttttttcactttgcagcatgtttggttaccttttccagaatcaattcaaccttccaaaatcaattctacaaaaagctacaaatctcagcttc 46830768  T
Q  131 tacggtgaggctagaatcaattct 154  Q
    ||||||||||||  ||||||||||    
T  46830767 tacggtgaggcttaaatcaattct 46830744  T

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Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 42145625 - 42145781
Alignment:
Q  31 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 130  Q
    |||||||||||||||||||| |||||||||| ||||  |||||||||| ||||| | || | ||||||||||| ||||||||||||| ||||  ||||||    
T  42145625 caccgtggtttctttattttccatcatgtttggttttcttttctaaaagtgattttgtctttcaaaatcaattttatgagaagctacaaatctcagcttc 42145724  T
Q  131 tacggtgaggctagaatcaattcttccattgtatttaactgacggttagataactcac 188  Q
    | ||||| |||||||||||||||||| ||| ||||||||||||  ||| |||||||||    
T  42145725 tgcggtg-ggctagaatcaattcttctattatatttaactgacatttatataactcac 42145781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 40791864 - 40791708
Alignment:
Q  31 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 130  Q
    |||||||||||||||||||| |||||||||| ||||  |||||||||| ||||| | || | ||||||||||| ||||||||||||| ||||  ||||||    
T  40791864 caccgtggtttctttattttccatcatgtttggttttcttttctaaaagtgattttgtctttcaaaatcaattttatgagaagctacaaatctcagcttc 40791765  T
Q  131 tacggtgaggctagaatcaattcttccattgtatttaactgacggttagataactcac 188  Q
    | | ||| |||||||||||||||||| ||| ||||||||||||  ||| |||||||||    
T  40791764 tgcagtg-ggctagaatcaattcttctattatatttaactgacatttatataactcac 40791708  T

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Target: scaffold0237 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 25510 - 25633
Alignment:
Q  31 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 130  Q
    ||||||||||| || | |||||| ||||||| ||| | ||||| |||||  |||| | | ||||||||||||||||  ||||||||| ||||  ||||||    
T  25510 caccgtggttttttcactttgcagcatgtttggttaccttttccaaaatcaattcaaccttccaaaatcaattctacaagaagctacaaatctcagcttc 25609  T
Q  131 tacggtgaggctagaatcaattct 154  Q
    ||||||||||||  ||||||||||    
T  25610 tacggtgaggcttaaatcaattct 25633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 29885959 - 29886082
Alignment:
Q  31 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 130  Q
    ||||||||||| || | |||||| ||||||| ||| | ||||| |||||  |||| | | ||||||||||||||||  ||||||||| ||||  ||||||    
T  29885959 caccgtggttttttcactttgcagcatgtttggttaccttttccaaaatcaattcaaccttccaaaatcaattctacaagaagctacaaatctcagcttc 29886058  T
Q  131 tacggtgaggctagaatcaattct 154  Q
    ||||||||||||  ||||||||||    
T  29886059 tacggtgaggcttaaatcaattct 29886082  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 31933031 - 31933154
Alignment:
Q  31 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 130  Q
    ||||||||||| || | |||||| ||||||| ||| | ||||| | |||  |||| | | ||||||||||||||||  ||||||||| ||||  ||||||    
T  31933031 caccgtggttttttcactttgcagcatgtttggttaccttttccagaatcaattcaaccttccaaaatcaattctacaagaagctacaaatctcagcttc 31933130  T
Q  131 tacggtgaggctagaatcaattct 154  Q
    ||||||||||||  ||||||||||    
T  31933131 tacggtgaggcttaaatcaattct 31933154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 42851040 - 42850917
Alignment:
Q  31 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 130  Q
    ||||||||||| || | |||||| ||||||| ||| | ||||| | |||  |||| | | ||||||||||||||||  ||||||||| ||||  ||||||    
T  42851040 caccgtggttttttcactttgcagcatgtttggttaccttttccagaatcaattcaaccttccaaaatcaattctacaagaagctacaaatctcagcttc 42850941  T
Q  131 tacggtgaggctagaatcaattct 154  Q
    ||||||||||||  ||||||||||    
T  42850940 tacggtgaggcttaaatcaattct 42850917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 3347490 - 3347610
Alignment:
Q  31 caccgtggtttctttattttgcatcatgttttgtttctttttctaaaattgattctatcatccaaaatcaattctatgagaagctacgaatccaagcttc 130  Q
    ||||||||||| || | |||||| ||||||| ||| | ||||| | |||  |||| | | |||||||| |||||||  ||||||||| ||||  ||||||    
T  3347490 caccgtggttttttcactttgcagcatgtttggttaccttttccagaatcaattcaaccttccaaaattaattctacaagaagctacaaatctcagcttc 3347589  T
Q  131 tacggtgaggctagaatcaat 151  Q
    ||||||||||||  |||||||    
T  3347590 tacggtgaggctcaaatcaat 3347610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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