View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10108_high_12 (Length: 242)
Name: NF10108_high_12
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 39234386 - 39234229
Alignment:
| Q |
7 |
tttgatgagtcgaaaaaatcagcccaatgc-atagctcatggacaaaaatgtctatgcggcaatgcaaaaaagtacatatagtgtagtgtgattgatgca |
105 |
Q |
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| T |
39234386 |
tttgatgagttgaaaaaatcagcccaatgccatagctcatggacaaaaatgtctatgcggcaatgcaaaaaagtacatatagtgtagtgtgattgatgca |
39234287 |
T |
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| Q |
106 |
gctttttacaaaggaaagttttataatatataccatagaaacgatatttaaacaacca |
163 |
Q |
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|||||| ||||||||| ||||||||| |||| | ||||||||||||| |||||||| |
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| T |
39234286 |
actttttgcaaaggaaaattttataatttataatagagaaacgatatttgaacaacca |
39234229 |
T |
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