View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10108_high_13 (Length: 240)
Name: NF10108_high_13
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_high_13 |
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| [»] chr8 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 22354096 - 22354318
Alignment:
| Q |
18 |
ataaatgtatatgattcttgctgcatacttttgaactccaatctatgacagaattatcacttatgtagtatttataacatacatacttttgaactccaaa |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
22354096 |
ataaatgtatatgtttcttgctgcatacttttgaactccaatctatgacagaattatcacttatgtagtatttatgacatgcatacttttgaactccaaa |
22354195 |
T |
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| Q |
118 |
ttggtggtctatgaactaatgctttaatttttattatcacagtttggtggagatggagaatataaacgatgaagtcaggactattttgaattgtggggaa |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22354196 |
ttggtagtctatgaactaatgctttaatttttattatcacagtttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaa |
22354295 |
T |
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| Q |
218 |
tgttaatgatggcatcaagactc |
240 |
Q |
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||||||||||| ||||||||||| |
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| T |
22354296 |
tgttaatgatgacatcaagactc |
22354318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 15004659 - 15004580
Alignment:
| Q |
161 |
ttggtggagatggagaatataaacgatgaagtcaggactattttgaattgtggggaatgttaatgatggcatcaagactc |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
15004659 |
ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaatgttaatgatgacatcaagactc |
15004580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 22342579 - 22342658
Alignment:
| Q |
161 |
ttggtggagatggagaatataaacgatgaagtcaggactattttgaattgtggggaatgttaatgatggcatcaagactc |
240 |
Q |
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| T |
22342579 |
ttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaattttaatgatgacatcaagactc |
22342658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 44270435 - 44270213
Alignment:
| Q |
18 |
ataaatgtatatgattcttgctgcatacttttgaactccaatctatgacagaattatcacttatgtagtatttataacatacatacttttgaactccaaa |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
44270435 |
ataaatgtatatgtttcttgctgcatacttttgaactccaatctatgacagaattatcacttatgtagtatttatgacatgcatacttttgaactccaaa |
44270336 |
T |
|
| Q |
118 |
ttggtggtctatgaactaatgctttaatttttattatcacagtttggtggagatggagaatataaacgatgaagtcaggactattttgaattgtggggaa |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44270335 |
ttggtagtctatgaactaatgctttaatttttattatcacagtttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaa |
44270236 |
T |
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| Q |
218 |
tgttaatgatggcatcaagactc |
240 |
Q |
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||||||||||| ||||||||||| |
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| T |
44270235 |
tgttaatgatgacatcaagactc |
44270213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 1672055 - 1672277
Alignment:
| Q |
18 |
ataaatgtatatgattcttgctgcatacttttgaactccaatctatgacagaattatcacttatgtagtatttataacatacatacttttgaactccaaa |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
1672055 |
ataaatgtatatgtttcttgctgcatacttttgaactccaatctatgacataattatcacttatgtagtatttatgacatgcatacttttgaactccaaa |
1672154 |
T |
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| Q |
118 |
ttggtggtctatgaactaatgctttaatttttattatcacagtttggtggagatggagaatataaacgatgaagtcaggactattttgaattgtggggaa |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1672155 |
ttggtagtctatgaactaatgctttaatttttattatcacagtttggtggagatggagaatataaacgatgaagtcaggactcttttgaattgtggggaa |
1672254 |
T |
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| Q |
218 |
tgttaatgatggcatcaagactc |
240 |
Q |
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||||||||||| ||||||||||| |
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| T |
1672255 |
tgttaatgatgacatcaagactc |
1672277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 26071647 - 26071425
Alignment:
| Q |
18 |
ataaatgtatatgattcttgctgcatacttttgaactccaatctatgacagaattatcacttatgtagtatttataacatacatacttttgaactccaaa |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
26071647 |
ataaatgtatatgtttcttgctgcatacttttgaactccaatctatgacagaattatcacttatgtagtatttatgacatgcatacttttgaactccaaa |
26071548 |
T |
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| Q |
118 |
ttggtggtctatgaactaatgctttaatttttattatcacagtttggtggagatggagaatataaacgatgaagtcaggactattttgaattgtggggaa |
217 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
26071547 |
ttggtagtctatgaactaatgctttaatttttattatcacagtttggtggagatggagaatataaacgatgaagtcaagactcttttgaattgtggggaa |
26071448 |
T |
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| Q |
218 |
tgttaatgatggcatcaagactc |
240 |
Q |
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||||||||||| ||||||||||| |
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| T |
26071447 |
tgttaatgatgacatcaagactc |
26071425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 10461197 - 10461276
Alignment:
| Q |
161 |
ttggtggagatggagaatataaacgatgaagtcaggactattttgaattgtggggaatgttaatgatggcatcaagactc |
240 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
10461197 |
ttggtggagatggagaatataaacgatgaagtcatgactcttttgaattgtggggaatgttaatgatgacatcaagactc |
10461276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 37650284 - 37650343
Alignment:
| Q |
17 |
aataaatgtatatgattcttgctgcatacttttgaactccaatctatgacagaattatca |
76 |
Q |
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||||||||| |||| | ||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
37650284 |
aataaatgtgtatgttccttgctgcatacttttgaattccactctatgacagaattatca |
37650343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 25387597 - 25387644
Alignment:
| Q |
33 |
tcttgctgcatacttttgaactcca-atctatgacagaattatcactt |
79 |
Q |
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|||||||| |||||||||||||||| |||| ||||||||||||||||| |
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| T |
25387597 |
tcttgctgtatacttttgaactccacatctttgacagaattatcactt |
25387644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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