View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10108_high_15 (Length: 238)

Name: NF10108_high_15
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10108_high_15
NF10108_high_15
[»] chr8 (6 HSPs)
chr8 (188-237)||(42667937-42667986)
chr8 (190-237)||(20056551-20056598)
chr8 (189-236)||(45215954-45216001)
chr8 (189-237)||(20057061-20057109)
chr8 (189-237)||(42667426-42667474)
chr8 (189-237)||(45215444-45215492)
[»] chr3 (4 HSPs)
chr3 (188-237)||(52288428-52288477)
chr3 (189-233)||(53583825-53583869)
chr3 (190-237)||(3377009-3377056)
chr3 (189-237)||(3382510-3382558)
[»] scaffold0246 (1 HSPs)
scaffold0246 (190-237)||(25827-25874)
[»] chr4 (1 HSPs)
chr4 (190-237)||(40487888-40487935)
[»] chr5 (5 HSPs)
chr5 (187-237)||(6013545-6013595)
chr5 (181-238)||(42991630-42991687)
chr5 (193-237)||(7932749-7932793)
chr5 (189-237)||(7933256-7933304)
chr5 (204-236)||(28559230-28559262)
[»] chr2 (3 HSPs)
chr2 (191-237)||(42847842-42847888)
chr2 (189-237)||(39641223-39641271)
chr2 (189-237)||(42847351-42847399)
[»] chr6 (6 HSPs)
chr6 (181-237)||(5195630-5195686)
chr6 (190-238)||(22972859-22972907)
chr6 (190-238)||(23815492-23815540)
chr6 (192-237)||(12340775-12340820)
chr6 (190-237)||(5238967-5239014)
chr6 (193-233)||(35225382-35225422)
[»] chr7 (1 HSPs)
chr7 (182-236)||(29710630-29710684)


Alignment Details
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 42667986 - 42667937
Alignment:
Q  188 aaggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42667986 aaggcttaattacaccacgggtcctttatgtttgacgtttgtaacagata 42667937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 20056551 - 20056598
Alignment:
Q  190 ggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20056551 ggcttaattacaccacgggtcctttatgtttgacgtttgtaacagata 20056598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 45216001 - 45215954
Alignment:
Q  189 aggcttaattacactacgggtcctttatgtttgacgtttgtaacagat 236  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  45216001 aggcttaattacaccacgggtcctttatgtttgacgtttgtaacagat 45215954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 20057109 - 20057061
Alignment:
Q  189 aggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    |||||||||||||| ||  |||||||| |||||||||||||||||||||    
T  20057109 aggcttaattacaccacatgtcctttaagtttgacgtttgtaacagata 20057061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 42667426 - 42667474
Alignment:
Q  189 aggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    |||||||||||||  ||  |||||||| |||||||||||||||||||||    
T  42667426 aggcttaattacatcacatgtcctttaagtttgacgtttgtaacagata 42667474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 45215444 - 45215492
Alignment:
Q  189 aggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    |||||||||||||| ||  |||||||| ||||||||||||||| |||||    
T  45215444 aggcttaattacaccacatgtcctttaagtttgacgtttgtaatagata 45215492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 52288477 - 52288428
Alignment:
Q  188 aaggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52288477 aaggcttaattacaccacgggtcctttatgtttgacgtttgtaacagata 52288428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 53583825 - 53583869
Alignment:
Q  189 aggcttaattacactacgggtcctttatgtttgacgtttgtaaca 233  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  53583825 aggcttaattacaccacgggtcctttatgtttgacgtttgtaaca 53583869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 3377009 - 3377056
Alignment:
Q  190 ggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    ||||||||||||| || ||||||||| |||||||||||||||||||||    
T  3377009 ggcttaattacaccacaggtcctttaagtttgacgtttgtaacagata 3377056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 3382558 - 3382510
Alignment:
Q  189 aggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    |||||||||||||  || ||| ||||| |||||||||||||||||||||    
T  3382558 aggcttaattacatcacaggttctttaagtttgacgtttgtaacagata 3382510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 25827 - 25874
Alignment:
Q  190 ggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25827 ggcttaattacaccacgggtcctttatgtttgacgtttgtaacagata 25874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 40487888 - 40487935
Alignment:
Q  190 ggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40487888 ggcttaattacaccacgggtcctttatgtttgacgtttgtaacagata 40487935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 6013545 - 6013595
Alignment:
Q  187 aaaggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  6013545 aaaggcttaattacaccacgagtcctttatgtttgacgtttgtaacagata 6013595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 42991630 - 42991687
Alignment:
Q  181 aaaaacaaaggcttaattacactacgggtcctttatgtttgacgtttgtaacagatat 238  Q
    ||||| ||| |||||||||||| || ||||||||| ||||||||||||||||||||||    
T  42991630 aaaaaaaaaagcttaattacaccacaggtcctttaagtttgacgtttgtaacagatat 42991687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 7932749 - 7932793
Alignment:
Q  193 ttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    |||||||||| | ||||||||||||||||||||||||||||||||    
T  7932749 ttaattacaccatgggtcctttatgtttgacgtttgtaacagata 7932793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 7933304 - 7933256
Alignment:
Q  189 aggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    |||||||||||||| ||  |||||||| |||||||||||||||||||||    
T  7933304 aggcttaattacaccacatgtcctttaagtttgacgtttgtaacagata 7933256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 28559230 - 28559262
Alignment:
Q  204 acgggtcctttatgtttgacgtttgtaacagat 236  Q
    |||||||||||| ||||||||||||||||||||    
T  28559230 acgggtcctttaagtttgacgtttgtaacagat 28559262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 42847888 - 42847842
Alignment:
Q  191 gcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  42847888 gcttaattacaccacgggtcctttatgtttgacgtttgtaacagata 42847842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 39641223 - 39641271
Alignment:
Q  189 aggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  39641223 aggcttaattacaccacgggtcctttatgtttgacatttgtaacagata 39641271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 42847351 - 42847399
Alignment:
Q  189 aggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    |||||||||||||| ||  |||||||| |||||||||||||||||||||    
T  42847351 aggcttaattacaccacatgtcctttaagtttgacgtttgtaacagata 42847399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 5195630 - 5195686
Alignment:
Q  181 aaaaacaaaggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    ||||| |||||||||||||||| || ||||||||| |||||||||||||||||||||    
T  5195630 aaaaaaaaaggcttaattacaccacaggtcctttaagtttgacgtttgtaacagata 5195686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 22972859 - 22972907
Alignment:
Q  190 ggcttaattacactacgggtcctttatgtttgacgtttgtaacagatat 238  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  22972859 ggcttaattacaccacgagtcctttatgtttgacgtttgtaacagatat 22972907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 23815540 - 23815492
Alignment:
Q  190 ggcttaattacactacgggtcctttatgtttgacgtttgtaacagatat 238  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  23815540 ggcttaattacaccacgagtcctttatgtttgacgtttgtaacagatat 23815492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 12340775 - 12340820
Alignment:
Q  192 cttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||    
T  12340775 cttaattacaccatgggtcctttatgtttgacgtttgtaacagata 12340820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 5239014 - 5238967
Alignment:
Q  190 ggcttaattacactacgggtcctttatgtttgacgtttgtaacagata 237  Q
    ||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  5239014 ggcttaattacaccacgggtcctttaaatttgacgtttgtaacagata 5238967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 35225382 - 35225422
Alignment:
Q  193 ttaattacactacgggtcctttatgtttgacgtttgtaaca 233  Q
    |||||||||||| |||||||||| |||||| ||||||||||    
T  35225382 ttaattacactaggggtcctttaagtttgaggtttgtaaca 35225422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 29710684 - 29710630
Alignment:
Q  182 aaaacaaaggcttaattacactacgggtcctttatgtttgacgtttgtaacagat 236  Q
    |||| ||||||| |||||||||  | |||||||| ||||||||||||||||||||    
T  29710684 aaaaaaaaggctaaattacacttggagtcctttaagtttgacgtttgtaacagat 29710630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University