View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10108_high_3 (Length: 433)
Name: NF10108_high_3
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 26783470 - 26783044
Alignment:
| Q |
1 |
ttgcatccatacctaaatgcttgcgttgtaggaaaatatggaaaaattgcacccacagattcgacgtggaagatgtccagaacgcagccaccggaatatt |
100 |
Q |
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| T |
26783470 |
ttgcatccatacctaaatgcttgcgttgtaggaaaatatggaaaaattgcacccacagcttcgacgtggaagatgtccagaacgcagccaccggaatatt |
26783371 |
T |
|
| Q |
101 |
cctccgatttccaacacgaactgcccaaaatagaaaattatcgcagatgataaatgttggcggccgcagctgaagtacaagctgatcgagtaaccgctcg |
200 |
Q |
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| T |
26783370 |
cctccgatttccaacacgaactgcccaaaatagaaaattatcgcagatgataaatgttggcggccgcggctgaagtacaagctgatcgagtaaccgctcg |
26783271 |
T |
|
| Q |
201 |
aacggtgtttccatttcagtcataacagcttcaacaacatctataaatttgtcaccaacaacgttagggatggtttcaaatcttatgctatcgggttttg |
300 |
Q |
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| T |
26783270 |
aacggtgcttccatttcagtcataacagcttcaacaacatctataaatttgtcaccaacaacgttagggatggtttcaaatcttatgctatcgggttttg |
26783171 |
T |
|
| Q |
301 |
gttcggagtttattagggttagccattcttgtgtgacaacgaaggttacaaggatgttgggattattaaagacaagtaacttgctgaagttcatcatagg |
400 |
Q |
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| T |
26783170 |
gttcggagtttattagggttagccattcttgtgtgacaacgaaggttacaaggatgttgggattattaaagacaagtaacttgctgaagttcatcatagg |
26783071 |
T |
|
| Q |
401 |
gtttatgtgtcctcttgatgggtatgg |
427 |
Q |
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| T |
26783070 |
gtttatgtgtcctcttgatgggtatgg |
26783044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 26762496 - 26762085
Alignment:
| Q |
10 |
tacctaaatgcttgcgttgtaggaaaatatggaaaaattgcacccacagattcgacgtggaagatgtccagaacgcagccaccggaatattcctccgatt |
109 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||| | |||||| || | ||||||||| |||||||| |||||||||||||| || |
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| T |
26762496 |
tacctaaattcttgcgttgtaggaagatatggaaaaattgcacccacaactccgacgttgaggttgtccagaatgcagccactggaatattcctccggtt |
26762397 |
T |
|
| Q |
110 |
tccaacacgaactgcccaaaatagaaaattatcgcagatgataaatgttggcggccgcagctgaagtacaagctgatcgagtaaccgctcgaacggtgtt |
209 |
Q |
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| T |
26762396 |
tccaacacgaattgcccaaaagagaaaacaatcgcagatgataaacgtcaccggtggccga------acaagccgatcgattaaccgctcgaaaggcgct |
26762303 |
T |
|
| Q |
210 |
tccatttcagtcataacagcttcaacaacatctataaatttgtcaccaacaacgttagggatggtttcaaatcttatgctatcgggttttggttcggagt |
309 |
Q |
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| T |
26762302 |
tccatttcagtcataacagcttcaacaacatccataaacttgtcaccaacaacgttagggatggattcaactcttatgttgtcgggttttggttctgaat |
26762203 |
T |
|
| Q |
310 |
ttattagggttagccattcttgtgtgacaacgaaggttacaaggatgttgggattattaaagacaagtaacttgctgaagttcatcatagggtttatgtg |
409 |
Q |
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|||| |||||||||||||||||||||||| ||||| ||||||||||| || |||||| |||||||||||||||| | ||||||||| ||||| ||||| |
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| T |
26762202 |
caattaaggttagccattcttgtgtgacaacaaaggtgacaaggatgttagggttattagagacaagtaacttgcttaggttcatcatggggttgatgtg |
26762103 |
T |
|
| Q |
410 |
tcctcttgatgggtatgg |
427 |
Q |
| |
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||| | |||||||||||| |
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| T |
26762102 |
tccacgtgatgggtatgg |
26762085 |
T |
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