View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10108_high_6 (Length: 366)
Name: NF10108_high_6
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 39245732 - 39246090
Alignment:
| Q |
1 |
accaatttgtagtgatgaagctttttggcaatcctgtttttctatccctacagcacatggtggtggtctcagcgttggtagtgatactgaaagagtcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245732 |
accaatttgtagtgatgaagctttttggcaatcctgtttttctatccctacagcacatggtggtggtctcagcgttggtagtgatactgaaagagtcaat |
39245831 |
T |
|
| Q |
101 |
aaacacattccctacagaaaaaagaa----------cttatcacatctatacttgctaaagtagagatatgactaaaaagatttgcaactgcaatttgaa |
190 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245832 |
aaacacattccctacagaaaaaaaaaaaaaagaagacttatcacatctatacttgctaaagtagagatatgactaaaaagatttgcaactgcaatttgaa |
39245931 |
T |
|
| Q |
191 |
tgatgcattgagattttttatgtcacaatgactctaataactgagatatcatgtccgtgagatgtcaatttagtattaagaatttattcttgtcactttc |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245932 |
tgatgcattgagattttttatgtcacaatgactctaataactgagatatcatgtccgtgagatgtcaatttagtattaagaatttattcttgtcactttc |
39246031 |
T |
|
| Q |
291 |
aatgacataatttatattccatcaaagatggttttaaaatggattaatgagactatatt |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39246032 |
aatgacataatttatattccatcaaagatggttttaaaatggattaatgagactatatt |
39246090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 39251734 - 39252036
Alignment:
| Q |
1 |
accaatttgtagtgatgaagctttttggcaatcctgtttttctatccctacagcacatggtggtggtctcagcgttggtagtgatactgaaagagtcaat |
100 |
Q |
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||||||||||||||||||||||||||||||||| | | |||||||||| || ||| ||||||||||||||| |||||||||| |||| |||||||||| |
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| T |
39251734 |
accaatttgtagtgatgaagctttttggcaatcattgtcttctatcccttgagaacaaggtggtggtctcagcattggtagtgacactgcaagagtcaat |
39251833 |
T |
|
| Q |
101 |
aaacacattccctacagaaaaaagaa------cttatcacatctatacttgctaaagtagagatatgactaaaaagatttgcaactgcaatttgaatgat |
194 |
Q |
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||||||||||||| ||| ||||| || ||| |||| | ||||||| | | |||||||||||||||||||||||||||||||||||||| |
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| T |
39251834 |
aaacacattccctgcaggaaaaaaaaaaaagacttgtcacttttatacttac--------atatatgactaaaaagatttgcaactgcaatttgaatgat |
39251925 |
T |
|
| Q |
195 |
gcattgagattttttatgtcacaatgactctaataactgagatatcatgtccgtgagatgtcaatttagtattaagaattta-ttcttgtcactttcaat |
293 |
Q |
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|||||||||||||||| |||||| ||||| ||||| ||||||||||||||| |||||||||||||||||| ||| |||||| || |||||||||| ||| |
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| T |
39251926 |
gcattgagattttttaagtcacatcgactccaataaatgagatatcatgtccatgagatgtcaatttagtagtaaaaatttattttttgtcactttaaat |
39252025 |
T |
|
| Q |
294 |
gacataattta |
304 |
Q |
| |
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|||||| |||| |
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| T |
39252026 |
gacatatttta |
39252036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 39261328 - 39261450
Alignment:
| Q |
1 |
accaatttgtagtgatgaagctttttggcaatcctgtttttctatccctacagcacatggtggtggtctcagcgttggtagtgatactgaaagagtcaat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| | | |||||||| |||||||| ||||||||||| | ||||||||||||||| ||||| ||| |
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| T |
39261328 |
accaatttgtagcgatgaagctttttggcaatccttgtctgctatcccttgagcacatgctggtggtctcaacattggtagtgatactgttagagttaat |
39261427 |
T |
|
| Q |
101 |
aaacacattccctacagaaaaaa |
123 |
Q |
| |
|
|||||||| ||||||| |||||| |
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|
| T |
39261428 |
aaacacataccctacataaaaaa |
39261450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 39252303 - 39252351
Alignment:
| Q |
301 |
tttatattccatcaaagatggttttaaaatggattaatgagactatatt |
349 |
Q |
| |
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|||| ||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
39252303 |
tttaaattccattgaagatggttttaaaaaggattaatgagactatatt |
39252351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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