View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10108_high_9 (Length: 324)
Name: NF10108_high_9
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 39234846 - 39234545
Alignment:
| Q |
1 |
tatgtatggtgcataaattagataaatgttgcatcatatataagnnnnnnnnaaggacatagtttgtttttatcattagatnnnnnnntcgcacctataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39234846 |
tatgtatggtgcataaattagataaatgttgcatcatgtataagttttttttagggatatagtttgtttttatcattagataaaaaaatcgcacctataa |
39234747 |
T |
|
| Q |
101 |
attaaatgatatctaatgaaatttattgatttaatagtgaaaataaaatttatgcatggtgtaacactattttatgcatgttagacaaagtctaaaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39234746 |
attaaatgatatctaatgaaatttattgatttaatagtgaaaataaaatttatgcatggtgtaacactattttatgcatgttagacaaagtctaaaacaa |
39234647 |
T |
|
| Q |
201 |
atggtgacgattactaagtataggaggacttgaacaatgagcatgagaatgaaaagcacattcatatataccagatgtggcgaggcgaaaatgattaact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39234646 |
atggtgacgattactaagtataggaggacttgaacaatgagcatgagaatgaaaagcacactcatatataccagatgtggcgaggcgaaaatgattaact |
39234547 |
T |
|
| Q |
301 |
gt |
302 |
Q |
| |
|
|| |
|
|
| T |
39234546 |
gt |
39234545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 11210693 - 11210742
Alignment:
| Q |
98 |
taaattaaatgatatctaatgaaatttattgatttaatagtgaaaataaa |
147 |
Q |
| |
|
|||||||||||| || || |||| ||||||||||||||||| |||||||| |
|
|
| T |
11210693 |
taaattaaatgacatatagtgaattttattgatttaatagtaaaaataaa |
11210742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University