View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10108_low_1 (Length: 1142)

Name: NF10108_low_1
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10108_low_1
NF10108_low_1
[»] chr7 (16 HSPs)
chr7 (9-443)||(14737671-14738105)
chr7 (477-748)||(14738139-14738411)
chr7 (889-1142)||(14739005-14739258)
chr7 (773-884)||(14738480-14738591)
chr7 (9-217)||(14744252-14744465)
chr7 (773-903)||(19780690-19780820)
chr7 (253-317)||(19358506-19358570)
chr7 (773-966)||(19723523-19723704)
chr7 (813-1011)||(19886367-19886565)
chr7 (909-1001)||(19781180-19781275)
chr7 (62-157)||(10487759-10487854)
chr7 (254-313)||(19722623-19722682)
chr7 (254-309)||(19887137-19887192)
chr7 (1037-1093)||(19886260-19886316)
chr7 (387-442)||(19722744-19722799)
chr7 (484-581)||(19780357-19780454)
[»] chr5 (7 HSPs)
chr5 (897-1142)||(17586953-17587198)
chr5 (477-758)||(17588285-17588570)
chr5 (9-223)||(17588893-17589107)
chr5 (255-443)||(17588591-17588779)
chr5 (9-217)||(17582855-17583068)
chr5 (779-855)||(17588119-17588195)
chr5 (851-880)||(17587199-17587228)
[»] chr3 (5 HSPs)
chr3 (773-966)||(32577580-32577773)
chr3 (255-342)||(32578246-32578334)
chr3 (907-966)||(12733565-12733624)
chr3 (254-315)||(12734226-12734287)
chr3 (1039-1077)||(12733436-12733474)
[»] chr2 (6 HSPs)
chr2 (272-373)||(18912914-18913014)
chr2 (873-973)||(18912342-18912442)
chr2 (283-371)||(18920168-18920256)
chr2 (254-309)||(18908362-18908417)
chr2 (1037-1093)||(18912206-18912262)
chr2 (22-60)||(14144289-14144327)
[»] chr6 (4 HSPs)
chr6 (1037-1093)||(14750722-14750778)
chr6 (276-342)||(14749963-14750030)
chr6 (22-65)||(6071330-6071373)
chr6 (389-442)||(14750068-14750121)
[»] scaffold0464 (1 HSPs)
scaffold0464 (255-315)||(8653-8713)
[»] chr8 (1 HSPs)
chr8 (9-63)||(35066259-35066313)


Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Original strand, 14737671 - 14738105
Alignment:
Q  9 ggacatcaacacctttactttgaataagatatttgctaacaagatcaagttctttctcattgggatcgttcgttgttgtcaatgcttattgtataatctc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| ||||||||||||    
T  14737671 ggacatcaacacctttactttgaataagatatttgctaacaagatcaagttctttctcattaggatcgtccgctgttgtcaatgcttgttgtataatctc 14737770  T
Q  109 aagaccccttgttactatcagacacatttagggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatatttttctct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14737771 aagaccccttgttactatcagacacatttagggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatatttttctct 14737870  T
Q  209 aacaagttttgtggcagatccaagaannnnnnnatgtaggggccataaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttac 308  Q
    ||||||||||||||| ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14737871 aacaagttttgtggcggatccaagaatttttttatgtaggggccataaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttac 14737970  T
Q  309 acatatcttaaacttgaacaaatttattatctatctatagatttacacatatatgagaaaaggaagataaaaaacatgtactcttcaaacagatattgat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14737971 acatatcttaaacttgaacaaatttattatctatctatagatttacacatatatgagaaaaggaagataaaaaacatgtactcttcaaacagatattgat 14738070  T
Q  409 ttcattcactacaaaactttgttatagataatgaa 443  Q
    |||||||||||||||||||||||||||||||||||    
T  14738071 ttcattcactacaaaactttgttatagataatgaa 14738105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 477 - 748
Target Start/End: Original strand, 14738139 - 14738411
Alignment:
Q  477 ataaacgttcaaattggctgagtgtatttttgtgagtccacctcatctgttattcatgtgtgaacagagctttggaatgaggaccaactatgttctaatt 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14738139 ataaacgttcaaattggctgagtgtatttttgtgagtccacctcatctgttattcatgtgtgaacagagctttggaatgaggaccaactatgttctaatt 14738238  T
Q  577 gaataccaacagggtttgagtatctcccataacgtggcgaaccaatgtctgaatctcggctgggagaggta-cctcattttagtgttgacgtgaattaaa 675  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  14738239 gaataccaacagggtttgagtatctcctataacgtggcaaaccaatgtctgaatctcggctggaagaggtaccctcattttagtgttgacgtgaattaaa 14738338  T
Q  676 taagattacctccaatggtgggaacatatagaaaaccaaaataaaaattgagttatcccactaccatgctttt 748  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14738339 taagattacctccaatggtgggaacatatagaaaaccaaaataaaaattgagttatcccactaccatgctttt 14738411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 889 - 1142
Target Start/End: Original strand, 14739005 - 14739258
Alignment:
Q  889 tttttaatatcataacaattgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattattcttttcaaaaaagaatgttgct 988  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14739005 tttttaatatcataacaattgtgtcacttatggtactagcttttaggcataaagtttcaagctaatttctttattattcttttcaaaaaagaatgttgct 14739104  T
Q  989 ccacttttgagaaatatgcattctttgcaattttgttctacattctcttgtgtaatatgggtctttcttgaatcataagatcacaacctcaactgtaagc 1088  Q
     |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  14739105 gcacttttgagaaatatgcattctttgcattttttttctacattctcttgtgtaatatgggtctttcttgaatcataagatcacaacctcaactataaac 14739204  T
Q  1089 acatccagcaataagaaagggagaaacagtgacactacttgtctccaaattaac 1142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14739205 acatccagcaataagaaagggagaaacagtgacactacttgtctccaaattaac 14739258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 773 - 884
Target Start/End: Original strand, 14738480 - 14738591
Alignment:
Q  773 ttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatgactatttcatttttgtacttgttaatgaag 872  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14738480 ttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaggtttggaaacaatgactatttcatttttgtacttgttaatgaag 14738579  T
Q  873 ttgtagtagaat 884  Q
    ||||||||||||    
T  14738580 ttgtagtagaat 14738591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 14744252 - 14744465
Alignment:
Q  9 ggacatcaacacctttactttgaataagatatttgctaacaagatcaagttctttctcattgggatcgttcgttgttgtcaatg-cttattgtataatct 107  Q
    ||||| ||||| |||||| |||||||||||||| | |||||||||||| |||||| |||||||||||||||| || | ||||||  || |||||| ||||    
T  14744252 ggacaacaacatctttaccttgaataagatattcgataacaagatcaatttctttttcattgggatcgttcgctgctatcaatgttttgttgtatgatct 14744351  T
Q  108 caagaccccttgttactatcagacacattt-ag----ggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatattt 202  Q
    ||||| ||||||||||||  |||||||||| ||    |||||||||||||||||| |||| | |||| |||||| ||||| ||||||||| ||||| |||    
T  14744352 caagatcccttgttactaatagacacatttgaggagaggagtaacaagagcaaaagggtgctacatcgactttttatcatttattttttcgaccatgttt 14744451  T
Q  203 ttctctaacaagttt 217  Q
    | ||| |||||||||    
T  14744452 tcctc-aacaagttt 14744465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 773 - 903
Target Start/End: Original strand, 19780690 - 19780820
Alignment:
Q  773 ttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatgactatttcatttttgtacttgttaatgaag 872  Q
    ||||||||||| ||||||||||||||||||||| | ||||||| ||||  |||||| |||||||||||||  |||| |||||||||||||| ||||||      
T  19780690 ttgatattcttcttggtttagttttgtttatactagttcaagtttatccaaactaattttggaaacaatggttattacatttttgtacttgataatgata 19780789  T
Q  873 ttgtagtagaatctaatttttaatatcataa 903  Q
    |||||||| |||||| |||||||||||||||    
T  19780790 ttgtagtataatctattttttaatatcataa 19780820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 19358506 - 19358570
Alignment:
Q  253 ataaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatctt 317  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  19358506 ataaaaagtagtagagtgaaatgttaaagcgagaaacatgtcaatgggttggttacagatatctt 19358570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 773 - 966
Target Start/End: Original strand, 19723523 - 19723704
Alignment:
Q  773 ttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatgactatttcatttttgtacttgttaatgaag 872  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||   ||||||          ||| | ||||| ||||| || || | ||||||      
T  19723523 ttgatattcttcttggtttagttttgtttataccagttcaagtatattcaaactaat---------aattattattttattttggttctagataatgata 19723613  T
Q  873 ttgtagtagaatctaatttttaatatcataacaattgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattatt 966  Q
    |||||||| |||||||||||||   ||| |||  | ||||||||||| || |||| ||||||||||||||||| |||||||| |||||||||||    
T  19723614 ttgtagtaaaatctaattttta---tcacaaccgtcgtgtcacttattgtgctagattttaggcatcaaggttgaagctaatctctttattatt 19723704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 813 - 1011
Target Start/End: Complemental strand, 19886565 - 19886367
Alignment:
Q  813 agtatatcagaactaagtttggaaacaatgactatttcatttttgtacttgttaatgaagttgtagtagaatctaatttttaatatcataacaattgtgt 912  Q
    ||||||||  |||||| |||| | || |||| | ||| ||||||||||||| ||||||  |||||||  ||||||  |||| ||||||||||  |  |||    
T  19886565 agtatatccaaactaattttgaacacgatgatttttttatttttgtacttgataatgatattgtagtcaaatctacctttttatatcataactgtcttgt 19886466  T
Q  913 cacttatggtactagcttttaggcatcaaggttcaagctaatttctttattattcttttcaaaaaagaatgttgctccacttttgagaaatatgcattc 1011  Q
    ||| | ||||| | |||||||||||||||  || ||||| |||||| | ||||| |||||| ||  |||||| ||| |||||||||| | |||||||||    
T  19886465 cacctgtggtattggcttttaggcatcaaacttgaagctgatttctctcttatttttttcacaatggaatgtggcttcacttttgaggattatgcattc 19886367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 909 - 1001
Target Start/End: Original strand, 19781180 - 19781275
Alignment:
Q  909 gtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttct---ttattattcttttcaaaaaagaatgttgctccacttttgagaa 1001  Q
    |||||| |||||||||||| ||||||| |||| |||| ||||||||||||   |||||||| |||||| ||| |||||| ||| ||||||||||||    
T  19781180 gtgtcagttatggtactagtttttaggaatcacggttgaagctaatttctttattattatttttttcagaaaggaatgtggcttcacttttgagaa 19781275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 10487759 - 10487854
Alignment:
Q  62 ttctcattgggatcgttcgttgttgtcaatgcttattgtataatctcaagaccccttgttactatcagacacatttagggagtaacaagagcaaaa 157  Q
    |||||||||||||| || | ||||||||||| || ||||||||| |||||| |||||||||||||| ||||  | || |||||||||  |||||||    
T  10487759 ttctcattgggatcatttgatgttgtcaatgattgttgtataatatcaagatcccttgttactatcggacaactctaaggagtaacagtagcaaaa 10487854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 254 - 313
Target Start/End: Original strand, 19722623 - 19722682
Alignment:
Q  254 taaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacata 313  Q
    ||||||||||||||||||| | ||||| ||| ||||||||||||||||| ||||||||||    
T  19722623 taaaaagtagtagagtgaatttttaaattgacaaacatgtcaatgggttcgttacacata 19722682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 19887192 - 19887137
Alignment:
Q  254 taaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttaca 309  Q
    ||||||||||||||||  |||||||||| | ||||||||||||| |||||||||||    
T  19887192 taaaaagtagtagagtctaatgttaaagcgtgaaacatgtcaataggttggttaca 19887137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1037 - 1093
Target Start/End: Complemental strand, 19886316 - 19886260
Alignment:
Q  1037 tgtgtaatatgggtctttcttgaatcataagatcacaacctcaactgtaagcacatc 1093  Q
    ||||||||| ||||||||||||||||| | || |||||||||||||  |||||||||    
T  19886316 tgtgtaatacgggtctttcttgaatcacaggaccacaacctcaacttcaagcacatc 19886260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 387 - 442
Target Start/End: Original strand, 19722744 - 19722799
Alignment:
Q  387 tactcttcaaacagatattgatttcattcactacaaaactttgttatagataatga 442  Q
    |||||||||||| ||||| || |||||| ||| |||||||||||||| ||||||||    
T  19722744 tactcttcaaactgatatcgaattcatttacttcaaaactttgttattgataatga 19722799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 484 - 581
Target Start/End: Original strand, 19780357 - 19780454
Alignment:
Q  484 ttcaaattggctgagtgtatttttgtgagtccacctcatctgttattcatgtgtgaacagagctttggaatgaggaccaactatgttctaattgaata 581  Q
    ||||||||||||||| |||| |||||||  |||||   | ||||| | ||| ||||||| |||||||||||||| ||||| | | ||||||| |||||    
T  19780357 ttcaaattggctgagcgtatatttgtgaacccaccctctgtgttacttatgggtgaacaaagctttggaatgagtaccaattgttttctaatagaata 19780454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 897 - 1142
Target Start/End: Complemental strand, 17587198 - 17586953
Alignment:
Q  897 atcataacaattgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattattcttttcaaaaaagaatgttgctccactttt 996  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  17587198 atcataacaattgtgtcacttatggtactagcttttaggcatcaagtttcaagctaatttctttattactcttttcaaaaaagaatgttgctgcactttt 17587099  T
Q  997 gagaaatatgcattctttgcaattttgttctacattctcttgtgtaatatgggtctttcttgaatcataagatcacaacctcaactgtaagcacatccag 1096  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17587098 gagaaatatgcattctttgcatttttcttctacattctcttgtgtaatatgggtctttcttgaatcataagatcacaacctcaactgtaagcacatccag 17586999  T
Q  1097 caataagaaagggagaaacagtgacactacttgtctccaaattaac 1142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17586998 caataagaaagggagaaacagtgacactacttgtctccaaattaac 17586953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 477 - 758
Target Start/End: Complemental strand, 17588570 - 17588285
Alignment:
Q  477 ataaacgttcaaattggctgagtgtatttttgtgagtccacctcatctgttattcatgtgtgaacagagctttggaatgaggaccaactatgttctaatt 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17588570 ataaacgttcaaattggctgagtgtatttttgtgagtccacctcatctcttattcatgtgtgaacagagctttggaatgaggaccaactatgttccaatt 17588471  T
Q  577 gaataccaacaggg-tttgagtatctcccataacgtggcgaaccaatgtctgaatctcggctgggagaggta-cctcattttagtgttga-cgtgaatta 673  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |||| ||    
T  17588470 gaataccaatagggttttgagtatctcccataacgtggcgaaccaatgtctgaatctcgactgggagaggtatcctcattttagtgttgaccatgaagta 17588371  T
Q  674 aataagattacctccaatggtgggaacat-atagaaaaccaaaataaaaattgagttatcccactaccatgcttttgcaaataatt 758  Q
    ||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17588370 aataagattacctccaatggtgggaacctaaaaaaaaaccaaaataaaaattgagttatcccactaccatgcttttgcaaataatt 17588285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 17589107 - 17588893
Alignment:
Q  9 ggacatcaacacctttactttgaataagatatttgctaacaagatcaagttctttctcattgggatcgttcgttgttgtcaatgcttattgtataatctc 108  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  17589107 ggacatcaacacctttactttgaataagatatttgcgaacaagatcaagttctttctcattgggatcgttcgctgttgtcaatgcttgttgtataatctc 17589008  T
Q  109 aagaccccttgttactatcagacacatttagggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatatttttctct 208  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  17589007 aagaccccttgttactatcggacacatttagggagtaacaagagcaaaaaggtgttgcatcggcttttcatcaaatattttttcaaccatatttttctct 17588908  T
Q  209 aacaagttttgtggc 223  Q
    |||||||||||||||    
T  17588907 aacaagttttgtggc 17588893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 255 - 443
Target Start/End: Complemental strand, 17588779 - 17588591
Alignment:
Q  255 aaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatcttaaacttgaacaaatttattatctatctatagatttac 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17588779 aaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatcttaaacttgaacaaatttattatctatctatagatttac 17588680  T
Q  355 acatatatgagaaaaggaagataaaaaacatgtactcttcaaacagatattgatttcattcactacaaaactttgttatagataatgaa 443  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17588679 acatatatgagaaaaggaagataaaaaacatatactcttcaaacatatattgatttcattcactacaaaactttgttatagataatgaa 17588591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 17583068 - 17582855
Alignment:
Q  9 ggacatcaacacctttactttgaataagatatttgctaacaagatcaagttctttctcattgggatcgttcgttgttgtcaatg-cttattgtataatct 107  Q
    ||||| ||||| |||| | |||||||||||||| | |||||||||||| |||||| |||||||||||||||| || ||||||||  || |||||||||||    
T  17583068 ggacaacaacatctttgccttgaataagatattcgataacaagatcaatttctttttcattgggatcgttcgctgctgtcaatgttttgttgtataatct 17582969  T
Q  108 caagaccccttgttactatcagacacattt-ag----ggagtaacaagagcaaaaaggtgttgcatcaacttttcatcatatattttttcaaccatattt 202  Q
    ||||| ||||||||||||  |||||||||| ||    ||||||| |||||||||| || | | |||| |||||| ||||| ||||||||| ||||| |||    
T  17582968 caagatcccttgttactaatagacacatttgaggagaggagtaataagagcaaaagggcgctacatcgactttttatcatttattttttcgaccatgttt 17582869  T
Q  203 ttctctaacaagttt 217  Q
    | ||| |||||||||    
T  17582868 tcctc-aacaagttt 17582855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 779 - 855
Target Start/End: Complemental strand, 17588195 - 17588119
Alignment:
Q  779 ttctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatgactatttcatttt 855  Q
    ||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  17588195 ttctttttggttttgttttgtttataccaatttaagtatatgagaactaagtttggaaacaatgactatttcatttt 17588119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 851 - 880
Target Start/End: Complemental strand, 17587228 - 17587199
Alignment:
Q  851 atttttgtacttgttaatgaagttgtagta 880  Q
    ||||||||||||||||||||||||||||||    
T  17587228 atttttgtacttgttaatgaagttgtagta 17587199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 3e-45; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 773 - 966
Target Start/End: Complemental strand, 32577773 - 32577580
Alignment:
Q  773 ttgatattctttttggtttagttttgtttataccaattcaagtatatcagaactaagtttggaaacaatgactatttcatttttgtacttgttaatgaag 872  Q
    ||||||||||| ||||||||||||||||||||| | ||||||| ||||  |||||| |||||| ||||||  |||| |||||||||||||| ||||||      
T  32577773 ttgatattcttcttggtttagttttgtttatactagttcaagtttatccaaactaactttggagacaatggttattacatttttgtacttgataatgata 32577674  T
Q  873 ttgtagtagaatctaatttttaatatcataacaattgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattatt 966  Q
    |||||||| |||||| |||||||||||||||   |||||||| ||||||||||||| |||||| |||| ||||  |||||||||||||||||||    
T  32577673 ttgtagtataatctattttttaatatcataagcgttgtgtcagttatggtactagcatttaggaatcatggttggagctaatttctttattatt 32577580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 255 - 342
Target Start/End: Complemental strand, 32578334 - 32578246
Alignment:
Q  255 aaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatc-ttaaacttgaacaaatttattatctat 342  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||| ||| |||||| || |||||||||||||    
T  32578334 aaaaagtagtagagtgaaatgttaaagctagaaacatgtcaatgggttggttacaaatatctttagacttgagcagatttattatctat 32578246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 907 - 966
Target Start/End: Complemental strand, 12733624 - 12733565
Alignment:
Q  907 ttgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattatt 966  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  12733624 ttgtgtcacttatggtactagcttttaggcatcaaggttgaagctaatttgtttattatt 12733565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 12734287 - 12734226
Alignment:
Q  254 taaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatc 315  Q
    ||||||||||||||| ||||| |||||  ||||||||||||||||||| ||||||| |||||    
T  12734287 taaaaagtagtagagcgaaattttaaatcgagaaacatgtcaatgggtgggttacaaatatc 12734226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1039 - 1077
Target Start/End: Complemental strand, 12733474 - 12733436
Alignment:
Q  1039 tgtaatatgggtctttcttgaatcataagatcacaacct 1077  Q
    ||||||| ||||||||||||||||||| |||||||||||    
T  12733474 tgtaataggggtctttcttgaatcataggatcacaacct 12733436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 272 - 373
Target Start/End: Complemental strand, 18913014 - 18912914
Alignment:
Q  272 aatgttaaagtgagaaacatgtcaatgggttggttacacatatcttaaacttgaacaaatttattatctatctatagatttacacatatatgagaaaagg 371  Q
    |||||||||| ||||||||||||||||| ||||||||| |||| ||  ||||| ||||||||||||||| | ||| ||| || ||||| || ||||||||    
T  18913014 aatgttaaagcgagaaacatgtcaatggtttggttacaaatatatttgacttggacaaatttattatctgt-tatggatctatacatagatcagaaaagg 18912916  T
Q  372 aa 373  Q
    ||    
T  18912915 aa 18912914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 873 - 973
Target Start/End: Complemental strand, 18912442 - 18912342
Alignment:
Q  873 ttgtagtagaatctaatttttaatatcataacaattgtgtcacttatggtactagcttttaggcatcaaggttcaagctaatttctttattattcttttc 972  Q
    ||||||||||||||||  | ||||||||||||  | ||||||| | ||| | | ||||||||||||| ||||| |||||||||||| ||||||| |||||    
T  18912442 ttgtagtagaatctaaactataatatcataaccgtggtgtcacctgtggcattggcttttaggcatcgaggttgaagctaatttctctattattattttc 18912343  T
Q  973 a 973  Q
    |    
T  18912342 a 18912342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 283 - 371
Target Start/End: Complemental strand, 18920256 - 18920168
Alignment:
Q  283 gagaaacatgtcaatgggttggttacacatat-cttaaacttgaacaaatttattatctatctatagatttacacatatatgagaaaagg 371  Q
    ||||| ||||||||||||||||||||| |||| |||| ||||| ||||||||||| ||||| ||| ||| || ||||| |||||||||||    
T  18920256 gagaatcatgtcaatgggttggttacaaatatccttagacttggacaaatttattgtctat-tattgatctatacatagatgagaaaagg 18920168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 18908417 - 18908362
Alignment:
Q  254 taaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttaca 309  Q
    |||||||||||| |||||||||||||||  ||||||||||||| || |||||||||    
T  18908417 taaaaagtagtaaagtgaaatgttaaagcaagaaacatgtcaacggtttggttaca 18908362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1037 - 1093
Target Start/End: Complemental strand, 18912262 - 18912206
Alignment:
Q  1037 tgtgtaatatgggtctttcttgaatcataagatcacaacctcaactgtaagcacatc 1093  Q
    |||| ||||||| |||||||||||||||| || |||||||||||||  |||||||||    
T  18912262 tgtgcaatatggctctttcttgaatcataggaccacaacctcaacttcaagcacatc 18912206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 14144289 - 14144327
Alignment:
Q  22 tttactttgaataagatatttgctaacaagatcaagttc 60  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  14144289 tttaccttgaataagatattcgctaacaagatcaagttc 14144327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1037 - 1093
Target Start/End: Original strand, 14750722 - 14750778
Alignment:
Q  1037 tgtgtaatatgggtctttcttgaatcataagatcacaacctcaactgtaagcacatc 1093  Q
    ||||||||||||||||||||||||||||| || |||||||||||||  |||||||||    
T  14750722 tgtgtaatatgggtctttcttgaatcataggaccacaacctcaacttcaagcacatc 14750778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 342
Target Start/End: Original strand, 14749963 - 14750030
Alignment:
Q  276 ttaaagtgagaaacatgtcaatgggttggttacacatatc-ttaaacttgaacaaatttattatctat 342  Q
    |||||| ||||||||||||||| |||||||||||  |||| ||| |||||| ||||||||||||||||    
T  14749963 ttaaagcgagaaacatgtcaataggttggttacaactatctttagacttgagcaaatttattatctat 14750030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 6071330 - 6071373
Alignment:
Q  22 tttactttgaataagatatttgctaacaagatcaagttctttct 65  Q
    ||||| |||||||||||||||||||||||||| |||||| ||||    
T  6071330 tttaccttgaataagatatttgctaacaagattaagttccttct 6071373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 389 - 442
Target Start/End: Original strand, 14750068 - 14750121
Alignment:
Q  389 ctcttcaaacagatattgatttcattcactacaaaactttgttatagataatga 442  Q
    ||||| |||| |||||| |||||||| | | |||||||||||||||||||||||    
T  14750068 ctctttaaactgatattaatttcatttaattcaaaactttgttatagataatga 14750121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 8653 - 8713
Alignment:
Q  255 aaaaagtagtagagtgaaatgttaaagtgagaaacatgtcaatgggttggttacacatatc 315  Q
    |||||||||||||||||||| |||||  |||||||| |||||||||| ||||||| |||||    
T  8653 aaaaagtagtagagtgaaattttaaatcgagaaacaggtcaatgggtgggttacaaatatc 8713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 35066259 - 35066313
Alignment:
Q  9 ggacatcaacacctttactttgaataagatatttgctaacaagatcaagttcttt 63  Q
    |||| |||||| |||||| ||||| ||||||||  ||||||||||||||||||||    
T  35066259 ggacgtcaacatctttaccttgaagaagatattctctaacaagatcaagttcttt 35066313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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