View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10108_low_11 (Length: 432)

Name: NF10108_low_11
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10108_low_11
NF10108_low_11
[»] chr4 (3 HSPs)
chr4 (45-180)||(52987302-52987437)
chr4 (325-416)||(52987090-52987181)
chr4 (244-286)||(52987196-52987238)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 45 - 180
Target Start/End: Complemental strand, 52987437 - 52987302
Alignment:
Q  45 gaacgatttaaaccccacatttatttcttttttgatttcaaggtccctcacaaaactttccccaatttgacgatgaggtggtgagttttagtgacgtggc 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52987437 gaacgatttaaaccccacatttatttcttttttgatttcaaggtccctcacaaaactttccccaatttgacgatgaggtggtgagttttagtgacgtggc 52987338  T
Q  145 atccttgtcactttggcaatgtggatactagtatac 180  Q
    ||||||||||||||| ||||||||||||||||||||    
T  52987337 atccttgtcactttgccaatgtggatactagtatac 52987302  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 325 - 416
Target Start/End: Complemental strand, 52987181 - 52987090
Alignment:
Q  325 aagtctgttaattctgaatcttaaattagggttttgctttcaattcccaaatcatcattttcaccttcaattggtgtttgcctagccctatg 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52987181 aagtctgttaattctgaatcttaaattagggttttgctttcaattcccaaatcatcattttcaccttcaattggtgtttgcctagccctatg 52987090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 52987238 - 52987196
Alignment:
Q  244 agaatccgggtcccaccttcttgacaccaaaacctatataaat 286  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  52987238 agaatccgggtcccaccttcttgacaccaaaacctatataaat 52987196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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