View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10108_low_12 (Length: 417)
Name: NF10108_low_12
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 22 - 400
Target Start/End: Complemental strand, 37626924 - 37626549
Alignment:
| Q |
22 |
actactaggaaaaagcaaaattaaaaatcaattgattcttatttaagaatctttttctaattcaactttttggtagtgtgatatagtattcaatacggat |
121 |
Q |
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| T |
37626924 |
actactaggaaaaagcaaaattaaaaatcaattgtttcttatttaagaatctttttctaattcaactttttggtagtgtgatatagtattcaatacggat |
37626825 |
T |
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| Q |
122 |
tcaaatttggtgcagtcacaaatttcttgcatttctacattcagcacattggtgaccattgtggataaaggtcggacggtgtagaaatcaagcaaatttt |
221 |
Q |
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| T |
37626824 |
tcaaatttggtgcagtcacaaatttcttgcatttctacattcagcacattggtgaccattg--gataaaggtcggacggtgtagaaatcaagcaaattta |
37626727 |
T |
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| Q |
222 |
attttttcaatcacaaatactgtcagatgaccttgatcaaacaatcactggtcactgatacgatgatacaatgcaaccaatccattcaatacacacttaa |
321 |
Q |
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| T |
37626726 |
attttta-aatctcaaatactgtcagatgaccttgatcaaacaatcactggtcactgatacgaggatgcaatgcaaccaatccattcaatacacacttaa |
37626628 |
T |
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| Q |
322 |
ttcaattttctattatagtgtaatcttgagcataaagtcacctgcagatttctgttaattctctttggtgtaatgactg |
400 |
Q |
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| T |
37626627 |
ttcaattttttattatagtgtaatcttgagcataaagtcacctgcagatttctgttaattctctttggtgtaatgactg |
37626549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 291 - 400
Target Start/End: Complemental strand, 37618276 - 37618167
Alignment:
| Q |
291 |
aatgcaaccaatccattcaatacacacttaattcaattttctattatagtgtaatcttgagcataaagtcacctgcagatttctgttaattctctttggt |
390 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
37618276 |
aatgcaaccaatccatccaatacacacttaattcaattttttattatagtgtaatcttgagcataaagtcacctgcatatttctgctaattctctttggt |
37618177 |
T |
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| Q |
391 |
gtaatgactg |
400 |
Q |
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|||||||||| |
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| T |
37618176 |
gtaatgactg |
37618167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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