View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10108_low_13 (Length: 401)
Name: NF10108_low_13
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 54607669 - 54607280
Alignment:
| Q |
1 |
aaaacattggctttttctgctagggcttaatagcagcaacaaattaaccgaaacccttcttcgattgagatgggagnnnnnnncagtatctagtctattg |
100 |
Q |
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| T |
54607669 |
aaaacattggctttttctgctagggcttaacagcagcagcaaattaaccgaaacccttcttcgattgagatgggagaaaaaaacagtatctagtctattg |
54607570 |
T |
|
| Q |
101 |
agtgcggcagtgtagggttttcggttcagattgagaggaaggaagaagatggcaaaaacaagtgttaatcgatatatggatatggacttataagacgtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| |
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| T |
54607569 |
agtgcggcagtgtagggttttcggttcagattgagaggaaggaagaagatggcaaaaacaagtgttaaccaatatatggatatggac---taagacgtgg |
54607473 |
T |
|
| Q |
201 |
tagacgtaagtgtgatgtgtctttgttggaggtgaactattatgtttctcattctcaactcgttaactgttccacttctattgatgttgatgctgatgct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
54607472 |
tagacgtaagtgtgatgtgtctttgttggaggtgaactattatgtttcttattctcaactcgttaactgttccacttcta------ctgatgctgatgct |
54607379 |
T |
|
| Q |
301 |
tctgttaagac-----gaccaaggctcgaaggaaa--------tacgttaggtggtgctaggnnnnnnnggacttacacgatttggaggaagagaaaaa |
386 |
Q |
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||||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
54607378 |
tctgttaagacggccaggccaaggctcgaaggaaaagaggaactacgttaggtggtgctaggaaaaaaaggacttacacgatttggaggaagaaaaaaa |
54607280 |
T |
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