View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10108_low_14 (Length: 376)
Name: NF10108_low_14
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 237
Target Start/End: Complemental strand, 39953903 - 39953683
Alignment:
| Q |
17 |
acttcgtatgcgtggggaggagctcaagaaaagtgctctcctagctcgtgcattggttcgcactacattagcaagatgtatgttttgaagttctaatact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39953903 |
acttcgtatgcgtggggaggagctcaagaaaagtgctctcctagctcgtgcattggttcgcactacattagcaagatgtatgttttgaagttctaatact |
39953804 |
T |
|
| Q |
117 |
tactttcttattgttttttatttcatttgtatgacattgttactacattattttaaatggaggagtgcctcgggtgaattatgtgatgctaaattactgc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39953803 |
tactttcttattgttttttatttcatttgtatgacattgttactatattattttaaatggaggagtgcctcgggtgaattatgtgatgctaaattactgc |
39953704 |
T |
|
| Q |
217 |
ttaagttgaagtgaaaatatt |
237 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39953703 |
ttaagttgaagtgaaaatatt |
39953683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 238 - 341
Target Start/End: Complemental strand, 39953152 - 39953049
Alignment:
| Q |
238 |
cgtgtggttttgtttagtggtcgacgctaccatagtaactagcgagatttggttttctgaatcgtgctaatatttcttgattacttatttttctctcttt |
337 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39953152 |
cgtgtggttttgtttagtggtcgacactaccatagtaactagcaagatttggttttctgaatcttgctaatatttcttgattacttatttttctctcttt |
39953053 |
T |
|
| Q |
338 |
gtac |
341 |
Q |
| |
|
|||| |
|
|
| T |
39953052 |
gtac |
39953049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 26016080 - 26016297
Alignment:
| Q |
17 |
acttcgtatgcgtggggaggagctcaagaaaagtgctctcctagctcgtgcattggttcgcactacattagcaagatgtatgttttgaagttctaatact |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
26016080 |
acttcgtatgggtggggaggagctcaagaaaagtgctctcctagctcgtgcattggttcgcactacattagcaagatgtatgtcttgaagttcttttact |
26016179 |
T |
|
| Q |
117 |
tactttcttattgttttttatttcatttgtatgacattgttactacattattttaaatggaggagtgcctcgggtgaattatgtgatgctaaattactgc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||| |||| ||||||||||||||| || || |
|
|
| T |
26016180 |
tactttcttattgttttttatttcatttgtatggcattgttactatattatttgaaatggaggagtgtctcaggtgttttatgtgatgctaaagtagtgt |
26016279 |
T |
|
| Q |
217 |
ttaagttgaagtgaaaat |
234 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
26016280 |
ttaagttgaagggaaaat |
26016297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 239 - 341
Target Start/End: Original strand, 26016796 - 26016898
Alignment:
| Q |
239 |
gtgtggttttgtttagtggtcgacgctaccatagtaactagcgagatttggttttctgaatcgtgctaatatttcttgattacttatttttctctctttg |
338 |
Q |
| |
|
||||||||| |||||| || ||| ||||||||| |||| |||||||| ||||||||||| ||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
26016796 |
gtgtggtttcgtttagctgttgacactaccatagcaactcttgagatttgattttctgaatcttgctaatatttcttgtttacttatttttttctctttg |
26016895 |
T |
|
| Q |
339 |
tac |
341 |
Q |
| |
|
||| |
|
|
| T |
26016896 |
tac |
26016898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 43793556 - 43793500
Alignment:
| Q |
171 |
aaatggaggagtgcctcgggtgaattatgtgatgctaaattactgcttaagttgaag |
227 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||||| ||| ||| ||||||||||||| |
|
|
| T |
43793556 |
aaatggaggagttcctcaggtgtattatgtgatgtgaaagtaccgcttaagttgaag |
43793500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 21952119 - 21952179
Alignment:
| Q |
171 |
aaatggaggagtgcctcgggtgaattatgtgatgctaaattactgcttaagttgaagtgaa |
231 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| ||| ||| ||| ||||||||||||| |
|
|
| T |
21952119 |
aaatggaggagtgcctcatgtgttttatgtgatgcgaaagtaccgctcaagttgaagtgaa |
21952179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University