View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10108_low_16 (Length: 350)
Name: NF10108_low_16
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 183 - 344
Target Start/End: Complemental strand, 2794149 - 2793988
Alignment:
| Q |
183 |
tctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctcaacatcctcaaactccagaaaatcagttataacctttccaatcgaaacaag |
282 |
Q |
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| T |
2794149 |
tctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctccacatcctcaaactccagaaaatcagttataagctttccaatcgaaacaag |
2794050 |
T |
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| Q |
283 |
gtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttctcac |
344 |
Q |
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| T |
2794049 |
gtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcac |
2793988 |
T |
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Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 2794313 - 2794217
Alignment:
| Q |
19 |
aatatcatgcacattcaattcttcatcatctactttctcaatttcttcaacaacaattccaccacctatttgcattgcatagtcacctatttcaaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794313 |
aatatcatgcacattcaattcttcatcatctactttctcaatttcttcaacaacaattccaccacctatttgcattgcatagtcacctatttcaaaa |
2794217 |
T |
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