View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10108_low_17 (Length: 344)
Name: NF10108_low_17
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_low_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 12614384 - 12614697
Alignment:
| Q |
17 |
atgtaaaacataatttaccctaaagaaaaataataacatgagtagtgtttcannnnnnnnaataatttaaaagtttaaatgaattaagtattgaaagttc |
116 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
12614384 |
atgtaaatcataatttaccctaaagaaaaataataacatgagtagtgtttcattttttttaataatttaaaagtttaaatgaattaagaattgaaagctc |
12614483 |
T |
|
| Q |
117 |
atcgaagttaaagcatatctcatagtccagaatgcatcgataaatgtacctacatagtactgagtactgacctaacaaagtcattatatttgtaatagaa |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12614484 |
atcgaagttaaagcatatctcacagtccagaatgcaccgacaaatgtacttacatagtactgagtactgacctaacaaagtcattatatttgtaatagaa |
12614583 |
T |
|
| Q |
217 |
attgaatttacgtttttaccgaatatgagtcaactctttaccgattagttagtcatgatattc---ttatannnnnnnnaatctattcacattaaccatt |
313 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||| ||||| | |||||| || | ||||||||||||||||||||| |
|
|
| T |
12614584 |
attgaatttacgtttttactaagtatgagtcaactctttaccgattagatagtcctaatattcctttttttttatttttaatctattcacattaaccatt |
12614683 |
T |
|
| Q |
314 |
gggagcatgcggtt |
327 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12614684 |
gggagcatgcggtt |
12614697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University