View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10108_low_18 (Length: 335)
Name: NF10108_low_18
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_low_18 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 23452325 - 23452659
Alignment:
| Q |
1 |
ggagattgatgaatggctacactagacctgagaaagaacttaaatgatttccaccctcttctgaaaacgccatgctaaatcctaaccaatttgcttttac |
100 |
Q |
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| T |
23452325 |
ggagattgatgaatggctacactagacctgagaaagaacttaaatgatttccaccctcttctgaaaacgccatgctaaatcctaaccaatttgcttttac |
23452424 |
T |
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| Q |
101 |
gtaccaaactcttgaggaaaaaacagacattcaaaactaggtgatcaacggatttcccctcaccat----aaccactaacgcaaacttgatcattattca |
196 |
Q |
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| T |
23452425 |
gtaccaaactcttgaggaaaaaacagacattcaaaactaggtgatcaacggatttcccctcaccataaccaaccactaacgcaaacttga-------tca |
23452517 |
T |
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| Q |
197 |
ttactatccataatcccccacctctcaaaattagctctgggtggaacctttttaagatcgttccccctttgcaatatagaattaaatttaaac---atgt |
293 |
Q |
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| T |
23452518 |
ttactatccataatcccccacctcgcaaaattagctctgggtggaacttttttaagatcgttccccctttgcaatatagaattaaatttaaacaatatgt |
23452617 |
T |
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| Q |
294 |
tgatatatccttgagctggatatagaatcaacacagcatgtg |
335 |
Q |
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| T |
23452618 |
tgatatatccttgagctggatatagaatcaacacagcatgtg |
23452659 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 4258793 - 4258751
Alignment:
| Q |
293 |
ttgatatatccttgagctggatatagaatcaacacagcatgtg |
335 |
Q |
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| T |
4258793 |
ttgatatggccttgagctggatatggaatcaacacagcatgtg |
4258751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 1282944 - 1282986
Alignment:
| Q |
293 |
ttgatatatccttgagctggatatagaatcaacacagcatgtg |
335 |
Q |
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| T |
1282944 |
ttgatatggccttgagctggatatggaatcaacacagcatgtg |
1282986 |
T |
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