View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10108_low_2 (Length: 519)
Name: NF10108_low_2
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_low_2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 204 - 519
Target Start/End: Original strand, 21787608 - 21787905
Alignment:
| Q |
204 |
catgaggagtggaaacaaagttgctgtgcatataaatgaattaaaagagcaaaattaatcatcatcaatgtcaaaagactttatttcaagtcattgctat |
303 |
Q |
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| T |
21787608 |
catgaggagtggaaacaaagttgctgtgcatatcaatgaattaaaagtgcaaaattaatcatcatcaatgtcaaaagactttatttcaagtcattgctat |
21787707 |
T |
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| Q |
304 |
aattttttctacctgaaaagaattacctct-aaaaaatatggcatatatgaacccggtctaaatatagttagtcacatcgacattttatgaagaacatcc |
402 |
Q |
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| T |
21787708 |
aattttttctacctgaaaagaattacctctaaaaaaatatggcatatatgaacccggtctaaaaatagttagtc--------------------acatcc |
21787787 |
T |
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| Q |
403 |
acacattttattccgtatgcctgacccacagttgtagcagaagtcacatccacacctagaaagaataattatatagttagacataaa-ttaattaatgta |
501 |
Q |
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| T |
21787788 |
acacatttttttccgtaagcctgacccacagttgtagcagaagtcacatccacacctagaaagaataattatatagttagacataaatttaattaatgta |
21787887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 427 - 519
Target Start/End: Original strand, 21794511 - 21794604
Alignment:
| Q |
427 |
cccacagttgtagcagaagtcacatccacacctagaaagaataattatatagttagacataaa-ttaattaatg--taaatatgtgaacaaaagat |
519 |
Q |
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| T |
21794511 |
cccacatttgtagcagaagtcacttccacacctagaaagaaaaat--tatagttagacataaatttaattaatgctaaaatatgtgaacaagagat |
21794604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 21794332 - 21794412
Alignment:
| Q |
149 |
gaaacaagcattccaatccagagaattctgttgactatttgaaaaacc-taattgacatgaggagtggaaacaaagttgct |
228 |
Q |
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| T |
21794332 |
gaaacaataattcctatccaaagaattctgttaacttcttgcgaaaccctaattgacatgaggagttgaaacaacgttgct |
21794412 |
T |
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