View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10108_low_23 (Length: 250)

Name: NF10108_low_23
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10108_low_23
NF10108_low_23
[»] chr1 (28 HSPs)
chr1 (15-250)||(7743154-7743390)
chr1 (143-250)||(6122805-6122912)
chr1 (143-226)||(16893429-16893512)
chr1 (143-250)||(21547438-21547545)
chr1 (143-250)||(31794222-31794329)
chr1 (143-250)||(52336732-52336839)
chr1 (143-237)||(12587294-12587387)
chr1 (143-250)||(6650606-6650713)
chr1 (163-250)||(12259271-12259358)
chr1 (143-219)||(7219876-7219952)
chr1 (186-250)||(8177183-8177247)
chr1 (144-228)||(9879471-9879555)
chr1 (186-250)||(33700774-33700838)
chr1 (150-250)||(51814505-51814605)
chr1 (143-222)||(952550-952629)
chr1 (143-226)||(1600250-1600333)
chr1 (143-250)||(25297783-25297890)
chr1 (143-222)||(31383756-31383835)
chr1 (144-250)||(17745216-17745321)
chr1 (147-241)||(44961785-44961879)
chr1 (143-241)||(48619167-48619265)
chr1 (143-208)||(2220025-2220090)
chr1 (169-250)||(15786304-15786385)
chr1 (158-202)||(8254854-8254898)
chr1 (186-250)||(8904425-8904489)
chr1 (147-219)||(15065007-15065079)
chr1 (186-250)||(17410242-17410306)
chr1 (143-175)||(28180845-28180877)
[»] chr3 (28 HSPs)
chr3 (15-114)||(40864833-40864932)
chr3 (143-250)||(2667873-2667980)
chr3 (143-250)||(10499067-10499174)
chr3 (143-223)||(49397499-49397579)
chr3 (143-228)||(52769941-52770026)
chr3 (143-249)||(14339622-14339728)
chr3 (143-228)||(51903836-51903921)
chr3 (143-208)||(54990755-54990820)
chr3 (146-250)||(4844472-4844576)
chr3 (146-250)||(4870168-4870272)
chr3 (150-222)||(33899653-33899725)
chr3 (145-228)||(44743815-44743898)
chr3 (143-249)||(11642167-11642273)
chr3 (160-250)||(14186659-14186748)
chr3 (186-250)||(30311317-30311381)
chr3 (186-246)||(49494147-49494207)
chr3 (143-250)||(8170683-8170790)
chr3 (143-222)||(10445097-10445176)
chr3 (147-250)||(36720392-36720495)
chr3 (164-250)||(4222152-4222238)
chr3 (143-237)||(13808843-13808937)
chr3 (147-227)||(2597181-2597262)
chr3 (143-220)||(44069799-44069876)
chr3 (143-244)||(47454575-47454676)
chr3 (182-250)||(203101-203169)
chr3 (143-195)||(7973622-7973674)
chr3 (186-250)||(27093362-27093426)
chr3 (143-199)||(36015510-36015566)
[»] chr7 (24 HSPs)
chr7 (147-250)||(45709670-45709773)
chr7 (143-250)||(41519223-41519329)
chr7 (143-250)||(15137564-15137671)
chr7 (143-222)||(9183149-9183228)
chr7 (144-250)||(20335790-20335896)
chr7 (143-208)||(30579388-30579453)
chr7 (147-250)||(24513808-24513911)
chr7 (143-222)||(25590650-25590729)
chr7 (147-250)||(41519072-41519175)
chr7 (143-250)||(43590918-43591025)
chr7 (143-221)||(7309396-7309473)
chr7 (143-228)||(2446341-2446426)
chr7 (143-220)||(2882991-2883067)
chr7 (143-208)||(21558181-21558246)
chr7 (186-250)||(26459411-26459475)
chr7 (143-223)||(27313692-27313772)
chr7 (143-222)||(15905632-15905710)
chr7 (147-250)||(35513477-35513580)
chr7 (143-202)||(37473673-37473732)
chr7 (144-202)||(4572256-4572314)
chr7 (186-250)||(18363707-18363771)
chr7 (186-250)||(22760874-22760938)
chr7 (186-250)||(23552129-23552193)
chr7 (186-250)||(37085550-37085614)
[»] scaffold0258 (1 HSPs)
scaffold0258 (143-222)||(15281-15360)
[»] chr5 (19 HSPs)
chr5 (143-250)||(16773818-16773925)
chr5 (147-220)||(29173531-29173604)
chr5 (143-246)||(29075796-29075899)
chr5 (146-250)||(14495766-14495870)
chr5 (143-250)||(6844740-6844847)
chr5 (143-250)||(22020820-22020927)
chr5 (143-250)||(22737093-22737200)
chr5 (143-222)||(43442235-43442314)
chr5 (143-228)||(8278233-8278318)
chr5 (143-208)||(24907542-24907607)
chr5 (169-250)||(25627068-25627149)
chr5 (143-250)||(1410619-1410724)
chr5 (143-250)||(3252247-3252354)
chr5 (144-202)||(35705045-35705103)
chr5 (186-250)||(87424-87488)
chr5 (143-199)||(10054109-10054165)
chr5 (144-240)||(18169793-18169887)
chr5 (186-250)||(18437096-18437160)
chr5 (158-250)||(43241655-43241747)
[»] chr8 (15 HSPs)
chr8 (147-250)||(968373-968476)
chr8 (153-250)||(23361617-23361714)
chr8 (143-250)||(3624591-3624697)
chr8 (143-250)||(11819787-11819894)
chr8 (143-250)||(16852351-16852458)
chr8 (143-250)||(44780072-44780179)
chr8 (158-250)||(35690037-35690129)
chr8 (143-250)||(2203503-2203610)
chr8 (143-222)||(28783099-28783178)
chr8 (146-220)||(6536561-6536635)
chr8 (143-177)||(7347921-7347955)
chr8 (143-228)||(3305146-3305231)
chr8 (143-223)||(16843753-16843832)
chr8 (186-250)||(19703488-19703552)
chr8 (147-250)||(20994419-20994523)
[»] chr4 (20 HSPs)
chr4 (143-220)||(7949412-7949489)
chr4 (143-250)||(49576852-49576959)
chr4 (143-241)||(51954134-51954232)
chr4 (147-250)||(21660106-21660209)
chr4 (147-250)||(21668870-21668973)
chr4 (186-249)||(19680789-19680852)
chr4 (143-250)||(28635707-28635814)
chr4 (150-244)||(13015444-13015538)
chr4 (147-243)||(18404845-18404941)
chr4 (186-250)||(37109352-37109416)
chr4 (186-246)||(38869783-38869843)
chr4 (143-222)||(37274417-37274496)
chr4 (182-228)||(24124052-24124098)
chr4 (144-202)||(47386750-47386808)
chr4 (146-199)||(30584783-30584836)
chr4 (143-244)||(30938177-30938278)
chr4 (142-175)||(37720171-37720204)
chr4 (150-250)||(9936926-9937026)
chr4 (186-250)||(19238578-19238642)
chr4 (182-238)||(42644907-42644963)
[»] chr6 (8 HSPs)
chr6 (147-222)||(33549143-33549218)
chr6 (143-250)||(6758380-6758487)
chr6 (147-250)||(12234469-12234572)
chr6 (146-237)||(12633033-12633124)
chr6 (143-250)||(28363948-28364055)
chr6 (143-222)||(31622949-31623028)
chr6 (158-202)||(12216803-12216847)
chr6 (142-218)||(14558005-14558080)
[»] scaffold0118 (1 HSPs)
scaffold0118 (143-250)||(41591-41698)
[»] chr2 (21 HSPs)
chr2 (143-250)||(29503282-29503388)
chr2 (147-250)||(42327357-42327460)
chr2 (143-228)||(25637184-25637269)
chr2 (143-208)||(38854420-38854485)
chr2 (143-219)||(33582015-33582091)
chr2 (143-250)||(1435075-1435181)
chr2 (143-250)||(11251098-11251205)
chr2 (143-250)||(42602565-42602672)
chr2 (147-244)||(28846708-28846805)
chr2 (143-208)||(38856120-38856185)
chr2 (144-200)||(31573600-31573656)
chr2 (143-219)||(35203341-35203417)
chr2 (147-250)||(3001390-3001493)
chr2 (186-249)||(14500289-14500352)
chr2 (143-208)||(2311777-2311842)
chr2 (143-200)||(37971956-37972013)
chr2 (143-220)||(41908596-41908673)
chr2 (186-250)||(4438980-4439044)
chr2 (186-250)||(23052524-23052588)
chr2 (186-250)||(34041589-34041653)
chr2 (186-250)||(39715003-39715067)
[»] scaffold0194 (1 HSPs)
scaffold0194 (160-222)||(13021-13083)
[»] scaffold0122 (1 HSPs)
scaffold0122 (143-250)||(6880-6984)
[»] scaffold0115 (1 HSPs)
scaffold0115 (143-208)||(42622-42687)
[»] scaffold0211 (1 HSPs)
scaffold0211 (146-250)||(24064-24168)
[»] scaffold0471 (1 HSPs)
scaffold0471 (182-228)||(8639-8685)
[»] scaffold0299 (1 HSPs)
scaffold0299 (186-248)||(11541-11603)
[»] scaffold0126 (1 HSPs)
scaffold0126 (143-244)||(25305-25406)
[»] scaffold0002 (1 HSPs)
scaffold0002 (182-250)||(94968-95036)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 7743154 - 7743390
Alignment:
Q  15 gggtcagacttgcaaatcagatcagctattgctcttgatcatctcaaaaactatatatatgtcgaagcagataaagaagctcatgttagagaggtattgt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7743154 gggtcagacttgcaaatcagatcagctattgctcttgatcatctcaaaaactatatatatgtcgaagcagataaagaagctcatgttagagaggtattgt 7743253  T
Q  115 attgtgtcaaatatctactg-nnnnnnngtttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagacc 213  Q
    ||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||| ||||    
T  7743254 attgtgtcaaatatctactgttttttttgtttgaagaagctaagttagcccacctaaattgacattttagataatcgaacttgagacctagaggaggacc 7743353  T
Q  214 acactcccaaatccctagttaataccactaggccaac 250  Q
    |||||||||||| ||||||||||||||||||||||||    
T  7743354 acactcccaaattcctagttaataccactaggccaac 7743390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 6122912 - 6122805
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| |||||||||| |||||||||    ||  ||||||||||||||||| ||||| || ||||||||||| |||| ||   ||||||||    
T  6122912 tttgaagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccact 6122813  T
Q  243 aggccaac 250  Q
    ||| ||||    
T  6122812 agggcaac 6122805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 16893512 - 16893429
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatc 226  Q
    |||||||||||||| |||||||||  ||||||||| |  ||| ||||||||||||||||| ||||| ||  |||||||||||||    
T  16893512 tttgaagaagctaaattagcccactcaaattgacaccggagaaaatcgaacctgagacctcgaggaggagtacactcccaaatc 16893429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 21547438 - 21547545
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||| |||  |||||||||||||||| ||||  ||| |||||||||||| |||| ||||| || ||| ||||||  |||| ||  |||||||||    
T  21547438 tttgaagaagttaaactagcccacctaaattggcatcagagagaatcgaacctgaaacctcgaggaggagcaccctcccatgtcccaagccaataccact 21547537  T
Q  243 aggccaac 250  Q
    ||||||||    
T  21547538 aggccaac 21547545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 31794222 - 31794329
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| |||||||||| ||||||||| |  ||  ||||||||   |||||| ||||| || ||||||||||| |||| ||  |||||||||    
T  31794222 tttgaagaagctaaattagcccacccaaattgacaccagagggaatcgaactctagaccttgaggaggagcacactcccaagtcccaagccaataccact 31794321  T
Q  243 aggccaac 250  Q
    ||||||||    
T  31794322 aggccaac 31794329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 52336732 - 52336839
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||  ||| |||||||| | ||||||||| |  |||||||||||||||||| ||  |||| || |||||||||| ||||| ||  |||||||||    
T  52336732 tttgaagaaattaaattagcccatccaaattgacaccagagataatcgaacctgagatcttaaggaggagcacactcccagatcccaagccaataccact 52336831  T
Q  243 aggccaac 250  Q
    ||||||||    
T  52336832 aggccaac 52336839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 12587387 - 12587294
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaata 237  Q
    |||||||||||||| ||||||||||||||||| || |  ||| ||||||||||||||||| ||||| || ||||||| || ||||| ||| ||||    
T  12587387 tttgaagaagctaaattagcccacctaaattg-caccggagagaatcgaacctgagacctcgaggaggagcacactcacagatcccaagtcaata 12587294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 6650713 - 6650606
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    ||||||||||||||  ||  ||||||||||||||| |  ||| ||||||||||||||| | ||||| || || ||||||  ||||| ||  |||||||||    
T  6650713 tttgaagaagctaaactaatccacctaaattgacaccagagagaatcgaacctgagacattgaggaggagcatactccccgatcccaagccaataccact 6650614  T
Q  243 aggccaac 250  Q
    ||||||||    
T  6650613 aggccaac 6650606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 12259358 - 12259271
Alignment:
Q  163 ccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    ||||| |||||||||||   || |||||||| |||||| | ||||| || |||||||||||||||| |||||||| ||||| ||||||    
T  12259358 ccacccaaattgacatcggtgagaatcgaacttgagacttcgaggaggagcacactcccaaatcccaagttaatatcactatgccaac 12259271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 7219876 - 7219952
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactc 219  Q
    |||||||||||||| |||| ||||||||||||  |||  ||| ||||||||||||||| | ||||| || |||||||    
T  7219876 tttgaagaagctaaattagtccacctaaattggtatcaaagagaatcgaacctgagacttcgaggaggagcacactc 7219952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 8177183 - 8177247
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||||||||||| |||| ||||| || |||||||||| ||||| ||  |||||||||||||||||    
T  8177183 aatcgaacctgaaaccttgaggaggagcacactcccagatcccaagccaataccactaggccaac 8177247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 9879555 - 9879471
Alignment:
Q  144 ttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccc 228  Q
    ||||||||| ||| |||||||||| ||||||||||   ||||||||||| |||||||||  |||||||  |||||| || |||||    
T  9879555 ttgaagaagttaaattagcccacccaaattgacataagagataatcgaatctgagacctcaaggaagagtacactctcagatccc 9879471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 33700774 - 33700838
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    ||||||||||||||||| ||||| || |||||||||| || || ||  |||||||||||||||||    
T  33700774 aatcgaacctgagaccttgaggaggagcacactcccagattccaagccaataccactaggccaac 33700838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 51814605 - 51814505
Alignment:
Q  150 aagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaa 249  Q
    ||||||| |||||||||| |||||| || |  ||| ||||||||||||||||| ||||| || ||||||| || ||| | ||| |||||||  |||||||    
T  51814605 aagctaaattagcccacccaaattggcaccggagagaatcgaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaa 51814506  T
Q  250 c 250  Q
    |    
T  51814505 c 51814505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 952629 - 952550
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccca 222  Q
    ||||| |||||||| ||| ||||||||||||||||||   || |||| |||||||||| | ||||| || ||||||||||    
T  952629 tttgacgaagctaaattaacccacctaaattgacatcggggagaatctaacctgagactttgaggatgagcacactccca 952550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 1600250 - 1600333
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatc 226  Q
    ||||||||||||||||||| ||| | ||||||||| |  ||| |||||||||||| || |  |||| || ||||||||||||||    
T  1600250 tttgaagaagctaagttagtccatccaaattgacaccagagagaatcgaacctgaaactttaaggaggagcacactcccaaatc 1600333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 25297890 - 25297783
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| ||| |||||||||||||||  |   || |||| ||||| |||||| ||||| || ||||||| || ||||  ||| |||||||||    
T  25297890 tttgaagaagctaaattatcccacctaaattgacgccggtgagaatcaaacctcagacctcgaggaggagcacactctcagatcctaagtcaataccact 25297791  T
Q  243 aggccaac 250  Q
    || |||||    
T  25297790 agaccaac 25297783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 31383756 - 31383835
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccca 222  Q
    |||||||||| |||||||||||||| |||||| || |  ||| ||||||||||||||||   |||| || ||||||||||    
T  31383756 tttgaagaaggtaagttagcccacccaaattggcacctaagagaatcgaacctgagaccccaaggaggagcacactccca 31383835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 17745216 - 17745321
Alignment:
Q  144 ttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccacta 243  Q
    ||||||||||||| ||| || ||||||||||||| |  ||| |||||||| |||||||| ||||| || ||||| | ||  |||| ||  ||||||||||    
T  17745216 ttgaagaagctaaattaacc-acctaaattgacaccagagagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaataccacta 17745314  T
Q  244 ggccaac 250  Q
    |||||||    
T  17745315 ggccaac 17745321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 44961879 - 44961785
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccac 241  Q
    |||||||||| |||||||||| |||||||||    ||| ||||||||||||||||  ||||| || |||||||  ||||| | || |||||||||    
T  44961879 aagaagctaaattagcccacccaaattgacactagagagaatcgaacctgagaccctgaggaggagcacactcttaaatctcaagctaataccac 44961785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 48619167 - 48619265
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccac 241  Q
    |||||||||| ||| |||| ||||  ||||||||| |  ||||||| |||||||||| || |||||| | ||||||||||| || | ||| ||||||||    
T  48619167 tttgaagaagttaaattagtccactcaaattgacaccggagataatagaacctgagatcttgaggaaaaacacactcccaagtctcaagtcaataccac 48619265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 2220090 - 2220025
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagagga 208  Q
    ||||||||| |||| ||||||||  |||||||||||   ||| ||||||||||||||||| |||||    
T  2220090 tttgaagaaactaaattagcccatttaaattgacattggagagaatcgaacctgagacctcgagga 2220025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 15786304 - 15786385
Alignment:
Q  169 aaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    ||||||||| |  ||| ||||||||||||||||| ||||| || |||||||||| ||||| ||  ||||| ||||| |||||    
T  15786304 aaattgacaccaaagagaatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaatactactagaccaac 15786385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 8254854 - 8254898
Alignment:
Q  158 ttagcccacctaaattgacatcctagataatcgaacctgagacct 202  Q
    |||||||||| ||||||||| |  |||||||||||||||||||||    
T  8254854 ttagcccaccgaaattgacaccagagataatcgaacctgagacct 8254898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 8904489 - 8904425
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||||||| |||||||| ||||| || ||||||| || ||||| ||| ||||| |||||||||||    
T  8904489 aatcgaacttgagaccttgaggaggagcacactcacatatcccaagtcaatactactaggccaac 8904425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 15065079 - 15065007
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactc 219  Q
    |||||||||| |||||||||| ||||||||| |   || ||| ||||||||||||| ||||| || |||||||    
T  15065079 aagaagctaaattagcccacccaaattgacaccggggaaaattgaacctgagaccttgaggatgagcacactc 15065007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 17410306 - 17410242
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||||||| ||||| || ||||| ||||||||||||| ||||| |   |||||||||||||||||    
T  17410306 aatcgaacttgagatctcgaggaggaccacactcccagatcccaaaccaataccactaggccaac 17410242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 28180877 - 28180845
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattga 175  Q
    ||||||||| |||||||||||||||||||||||    
T  28180877 tttgaagaaactaagttagcccacctaaattga 28180845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 40864833 - 40864932
Alignment:
Q  15 gggtcagacttgcaaatcagatcagctattgctcttgatcatctcaaaaactatatatatgtcgaagcagataaagaagctcatgttagagaggtattgt 114  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  40864833 gggtcagaattgcaaatcagatcagctattgctcttgatcatctcaaaaactacatatatgtggaagcagataaagaagctcatgttagagaggtattgt 40864932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 2667980 - 2667873
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    ||||||||||||||  |||||||||||||||||||    ||||||||||||||||||||| |||||||| |||||||||| ||||| ||  ||||||||     
T  2667980 tttgaagaagctaaactagcccacctaaattgacactagagataatcgaacctgagacctcgaggaagagcacactcccagatcccaagccaataccacc 2667881  T
Q  243 aggccaac 250  Q
    ||||||||    
T  2667880 aggccaac 2667873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 10499067 - 10499174
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| |||||||||| |||||||||||  ||| |||||||||||||||||  ||||||| || ||||||| ||||| ||  ||||||||     
T  10499067 tttgaagaagctaaattagcccacccaaattgacatcggagagaatcgaacctgagacctcaaggaagagcagactcccagatcccaagccaataccacc 10499166  T
Q  243 aggccaac 250  Q
    ||||||||    
T  10499167 aggccaac 10499174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 49397499 - 49397579
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaa 223  Q
    |||||||||||||| |||| |||||||||||||||||  |||||||||||| |||||||| |||||  | |||||||||||    
T  49397499 tttgaagaagctaaattagtccacctaaattgacatctaagataatcgaacatgagacctcgaggagaagcacactcccaa 49397579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 52769941 - 52770026
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccc 228  Q
    |||||||||||||| ||||||||||||||||||||    ||| |||||||||||||||||  |||| || |||||||||| |||||    
T  52769941 tttgaagaagctaaattagcccacctaaattgacactaaagagaatcgaacctgagacctcaaggaggagcacactcccagatccc 52770026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 14339728 - 14339622
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| ||||||||||| ||||| ||     || ||||||||||||||| | ||||| || |||||||||||||||| ||  ||||||||     
T  14339728 tttgaagaagctaaattagcccaccttaattggcactagggagaatcgaacctgagacattgaggaggagcacactcccaaatcccaagccaataccacc 14339629  T
Q  243 aggccaa 249  Q
    |||||||    
T  14339628 aggccaa 14339622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 51903836 - 51903921
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccc 228  Q
    |||||||||||||| |||||||||  ||||||||| |  ||| ||||||||||||||||  ||||| || |||||||||| |||||    
T  51903836 tttgaagaagctaaattagcccactcaaattgacaccggagagaatcgaacctgagaccacgaggaggagcacactcccagatccc 51903921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 54990820 - 54990755
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagagga 208  Q
    |||||||||||||| ||||||||||||||||| ||||   || ||||||||||||||||| |||||    
T  54990820 tttgaagaagctaaattagcccacctaaattgccatcgaggagaatcgaacctgagaccttgagga 54990755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 4844472 - 4844576
Alignment:
Q  146 gaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactagg 245  Q
    ||||||||||| |||||||||  |||||| || |  ||| |||||| |||||||||| ||||| || |||||||||| ||||| ||| |||||||| ||     
T  4844472 gaagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccaga 4844571  T
Q  246 ccaac 250  Q
    |||||    
T  4844572 ccaac 4844576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 4870168 - 4870272
Alignment:
Q  146 gaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactagg 245  Q
    ||||||||||| |||||||||  |||||| || |  ||| |||||| |||||||||| ||||| || |||||||||| ||||| ||| |||||||| ||     
T  4870168 gaagaagctaaattagcccacacaaattggcaccggagagaatcgatcctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccaga 4870267  T
Q  246 ccaac 250  Q
    |||||    
T  4870268 ccaac 4870272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 33899725 - 33899653
Alignment:
Q  150 aagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccca 222  Q
    ||||||| ||||| |||| ||||||||| |  ||| ||||||||||||||||||||||| || ||||||||||    
T  33899725 aagctaaattagcacacccaaattgacaccaaagagaatcgaacctgagacctagaggaggagcacactccca 33899653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 44743815 - 44743898
Alignment:
Q  145 tgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccc 228  Q
    |||||||||||| ||| |||||| |||||| ||    ||||||||||||||||||||| ||||| || |||||||||| |||||    
T  44743815 tgaagaagctaaattaacccacccaaattggcactggagataatcgaacctgagacctcgaggaggagcacactcccagatccc 44743898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 249
Target Start/End: Original strand, 11642167 - 11642273
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    ||||||||||||||  || ||| | ||||||||||    ||||||||||||||||||||| ||||| || |||| || || ||||| |||| |||||| |    
T  11642167 tttgaagaagctaaactaaccctcttaaattgacactaaagataatcgaacctgagaccttgaggaggatcacaatctcagatcccaagtttataccagt 11642266  T
Q  243 aggccaa 249  Q
    |||||||    
T  11642267 aggccaa 11642273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 14186748 - 14186659
Alignment:
Q  160 agcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||||||||||||||||| |  ||| ||||||||||||||||| ||||| || |||||| |||  |||| ||  |||||||||||||||||    
T  14186748 agcccacctaaattgacaccggagagaatcgaacctgagaccttgaggaggagcacact-ccaggtcccaagacaataccactaggccaac 14186659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 30311381 - 30311317
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    ||||||||||||||||| ||||| || |||||||||| ||||| ||   ||||||||||||||||    
T  30311381 aatcgaacctgagaccttgaggaggagcacactcccagatcccaagcctataccactaggccaac 30311317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 49494147 - 49494207
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggc 246  Q
    |||| |||||||||||| |||||||| |||||||||||||  | ||| |||||||||||||    
T  49494147 aatcaaacctgagacctcgaggaagagcacactcccaaatttcaagtcaataccactaggc 49494207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 8170790 - 8170683
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||  ||| |||||||||| ||||||||| |  ||  ||||||||||||||||| ||| | || ||||||||||| |  | ||  |||||||||    
T  8170790 tttgaagaatttaaattagcccacccaaattgacaccagaggaaatcgaacctgagaccttgagtaggagcacactcccaagtttcaagccaataccact 8170691  T
Q  243 aggccaac 250  Q
    ||||||||    
T  8170690 aggccaac 8170683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 10445097 - 10445176
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccca 222  Q
    |||||||||||||| |||||||||  |||||  || |  ||| ||||||||||||||||| ||||| || ||||||||||    
T  10445097 tttgaagaagctaaattagcccactcaaattagcaccagagagaatcgaacctgagacctcgaggaggagcacactccca 10445176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 36720495 - 36720392
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggc 246  Q
    ||||||||||   ||||||||||||||||||    ||| |||||||||||| |||| ||||| || |||||||||| ||||| ||  |||||||| || |    
T  36720495 aagaagctaaaccagcccacctaaattgacactagagagaatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaataccaccagac 36720396  T
Q  247 caac 250  Q
    ||||    
T  36720395 caac 36720392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 4222238 - 4222152
Alignment:
Q  164 cacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||||||||||||| |  ||| |||||||||| |||| | ||||| || |||||||||| ||||| ||  |||||||||| ||||||    
T  4222238 cacctaaattgacaccagagagaatcgaacctaagactttgaggaggagcacactcccagatcccaagccaataccactaagccaac 4222152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 237
Target Start/End: Original strand, 13808843 - 13808937
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaata 237  Q
    |||||||||||||| |||  ||| | ||||||||||   ||| ||| ||||||||||||||||||| || |||||| ||| ||||| ||| ||||    
T  13808843 tttgaagaagctaaattaatccatccaaattgacattagagagaattgaacctgagacctagaggaggagcacactgccagatcccaagtcaata 13808937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 227
Target Start/End: Original strand, 2597181 - 2597262
Alignment:
Q  147 aagaagctaagttag-cccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatcc 227  Q
    |||||||||| |||| |||||||||||| ||||  |||| | |||||||||||||||  |||| || |||||||| ||||||    
T  2597181 aagaagctaaattagtcccacctaaatttacatagtagagattcgaacctgagacctcaaggaggagcacactcctaaatcc 2597262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 44069876 - 44069799
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcc 220  Q
    ||||||||||||||  |||||||||||||||| || |  | | |||| |||||||||||| ||||| || ||||||||    
T  44069876 tttgaagaagctaaactagcccacctaaattggcaccggaaagaatcaaacctgagaccttgaggaggagcacactcc 44069799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 47454575 - 47454676
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    ||||||||||||||  || ||||||||||||| |||    || ||||||||||||||||| ||||| || |||||||| | ||| | ||  |||||||||    
T  47454575 tttgaagaagctaaactaacccacctaaattggcattggggagaatcgaacctgagacctcgaggaggagcacactccaagatctcaagccaataccact 47454674  T
Q  243 ag 244  Q
    ||    
T  47454675 ag 47454676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 203169 - 203101
Alignment:
Q  182 agataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||||||||||||| | ||||  ||||| | |||||||||  ||||| ||| |||||||||||||||||    
T  203169 agataatcgaacctcaaaccttaaggaaaagcacactccctgatcccaagtcaataccactaggccaac 203101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 7973674 - 7973622
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacct 195  Q
    |||||||||||||| |||| ||||| |||||||||||  ||| ||||||||||    
T  7973674 tttgaagaagctaaattagtccacccaaattgacatcagagagaatcgaacct 7973622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 27093362 - 27093426
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||| |||||||||||| ||||| || ||||||||||| | || ||  |||||||||||||||||    
T  27093362 aatcaaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaac 27093426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 36015566 - 36015510
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgaga 199  Q
    ||||||||||| || |||||||||||||||||||| |  ||| ||||| ||||||||    
T  36015566 tttgaagaagcaaaattagcccacctaaattgacaccgaagagaatcgtacctgaga 36015510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 45709670 - 45709773
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggc 246  Q
    ||||||||||||||||||||||||||||  |||  ||||||||||||||||||||| ||||| || ||||||| || ||||| || ||||||||||||||    
T  45709670 aagaagctaagttagcccacctaaattggtatcggagataatcgaacctgagacctcgaggaggagcacactctcagatcccaagctaataccactaggc 45709769  T
Q  247 caac 250  Q
    ||||    
T  45709770 caac 45709773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 41519223 - 41519329
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| |||||||||||||||||||| |  ||| || |||||||||||||| ||||| || |||||||| ||||||| ||| |||||||||    
T  41519223 tttgaagaagctaaattagcccacctaaattgaca-cagagagaagcgaacctgagaccttgaggaggagcacactcctaaatcccaagtcaataccact 41519321  T
Q  243 aggccaac 250  Q
    ||||||||    
T  41519322 aggccaac 41519329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 15137671 - 15137564
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    ||||||||| |||| |||||||||| ||||||||| |  ||| |||| |||||||||||| ||||| || |||||||| ||||||| ||| | ||||||     
T  15137671 tttgaagaaactaaattagcccacccaaattgacaccagagagaatctaacctgagaccttgaggaggagcacactcctaaatcccaagtcagtaccacc 15137572  T
Q  243 aggccaac 250  Q
    ||||||||    
T  15137571 aggccaac 15137564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 9183149 - 9183228
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccca 222  Q
    ||||||||| |||| |||||||||| ||||||||| |  ||||||||||||||||||| | ||||| || ||||||||||    
T  9183149 tttgaagaaactaaattagcccacccaaattgacaccagagataatcgaacctgagactttgaggaggagcacactccca 9183228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 20335790 - 20335896
Alignment:
Q  144 ttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccacta 243  Q
    ||||||||| ||| |||||||| | |||||||||||   || ||||||||||||||||| ||||| || ||||||||||| |||| ||  |||||| |||    
T  20335790 ttgaagaagttaaattagcccatccaaattgacatcggtgagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacctcta 20335889  T
Q  244 ggccaac 250  Q
    | |||||    
T  20335890 gaccaac 20335896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 30579453 - 30579388
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagagga 208  Q
    |||||||||||||| ||||||||||||||||| || |  ||| ||||||||||||||||| |||||    
T  30579453 tttgaagaagctaaattagcccacctaaattggcaccagagaaaatcgaacctgagaccttgagga 30579388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 24513911 - 24513808
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggc 246  Q
    |||||| ||| |||||||||| |||||||||||   || |||||||||||||||||  ||||  |  ||||||||||||| | ||  |||||||||||||    
T  24513911 aagaagttaaattagcccacccaaattgacatcagtgaaaatcgaacctgagacctcaaggagaagtacactcccaaatctcaagccaataccactaggc 24513812  T
Q  247 caac 250  Q
    ||||    
T  24513811 caac 24513808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 25590729 - 25590650
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccca 222  Q
    |||||||||||||| |||||||||  ||||||||| |  ||| ||||||||| ||||||| ||||| || ||||||||||    
T  25590729 tttgaagaagctaaattagcccactcaaattgacaccgaagaaaatcgaacccgagacctcgaggaggagcacactccca 25590650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 41519072 - 41519175
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggc 246  Q
    |||||||||| |||||||||| ||||||||| |  ||||||||||| ||||||||| ||| | || |||||||  ||||||| ||  | || ||||||||    
T  41519072 aagaagctaaattagcccacccaaattgacaccggagataatcgaatctgagaccttgagaaggagcacactcttaaatcccaagccagtatcactaggc 41519171  T
Q  247 caac 250  Q
    ||||    
T  41519172 caac 41519175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 43591025 - 43590918
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| ||||||||||| ||||| ||     || ||||||||||||||| | ||||| || ||||||||||| |||| ||  ||||||||     
T  43591025 tttgaagaagctaaattagcccaccttaattggcactagggagaatcgaacctgagacattgaggaggagcacactcccaagtcccaagccaataccacc 43590926  T
Q  243 aggccaac 250  Q
    ||||||||    
T  43590925 aggccaac 43590918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 7309473 - 7309396
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccc 221  Q
    |||||||||||||| ||||||||| |||||||||| |  ||| |||||||| |||||||| ||||| || |||||||||    
T  7309473 tttgaagaagctaaattagcccacttaaattgaca-cggagagaatcgaacttgagacctcgaggaggagcacactccc 7309396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 2446426 - 2446341
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccc 228  Q
    |||||||||||||| ||||||||||||||| | || |  ||| |||||||| ||||| || ||||| || ||||||||||| ||||    
T  2446426 tttgaagaagctaaattagcccacctaaatcggcaccggagagaatcgaacttgagatctcgaggaggagcacactcccaagtccc 2446341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 2883067 - 2882991
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcc 220  Q
    |||||||||||||||| ||||||||||||||| || |  ||| ||| ||||||||||||| ||||| || ||||||||    
T  2883067 tttgaagaagctaagt-agcccacctaaattgccaccagagagaattgaacctgagaccttgaggaggagcacactcc 2882991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 21558246 - 21558181
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagagga 208  Q
    |||||||||||||| ||| ||||||||||||| || |  ||| ||||||||||||||||| |||||    
T  21558246 tttgaagaagctaaattaacccacctaaattggcaccagagagaatcgaacctgagaccttgagga 21558181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 26459411 - 26459475
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    ||||||||||||||||| ||||| || ||||||||||  |||| ||  |||||||||||||||||    
T  26459411 aatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 26459475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 27313692 - 27313772
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaa 223  Q
    |||||||||||||| ||||| ||||||||||| ||||  ||| ||||||| |||| |||| ||||| || || ||||||||    
T  27313692 tttgaagaagctaaattagctcacctaaattggcatcagagagaatcgaatctgaaaccttgaggaggagcaaactcccaa 27313772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 15905632 - 15905710
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccca 222  Q
    |||||||||||||| ||| |||||| ||||||||||    || |||||||||||||||||| |||| || ||||||||||    
T  15905632 tttgaagaagctaaattaacccacccaaattgacattagggagaatcgaacctgagaccta-aggaggagcacactccca 15905710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 35513580 - 35513477
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggc 246  Q
    |||||||||| |||| |||||||||||  ||||  ||| |||||||| |||||  | ||||| || ||||||| ||| |||| ||  |||||||||||||    
T  35513580 aagaagctaaattagtccacctaaattaccatcggagaaaatcgaacatgagatatcgaggaggagcacactctcaagtcccaagcaaataccactaggc 35513481  T
Q  247 caac 250  Q
    ||||    
T  35513480 caac 35513477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 37473732 - 37473673
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacct 202  Q
    |||||||||||||| ||| |||||||||||||||||    || |||||||||||||||||    
T  37473732 tttgaagaagctaaattaacccacctaaattgacattagggagaatcgaacctgagacct 37473673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 4572256 - 4572314
Alignment:
Q  144 ttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacct 202  Q
    ||||||||| ||| |||||||||| ||||||||| |  ||| |||||||||||||||||    
T  4572256 ttgaagaagataaattagcccacccaaattgacaccggagagaatcgaacctgagacct 4572314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 18363771 - 18363707
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||| |||||||||||| ||||| || |||||||||||||| | ||   ||||||||||||||||    
T  18363771 aatcaaacctgagaccttgaggaggagcacactcccaaatctcaagcctataccactaggccaac 18363707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 22760938 - 22760874
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    ||||||||||||||||| ||||| || ||||||||||  |||| ||| |||||||| || |||||    
T  22760938 aatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaac 22760874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 23552193 - 23552129
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||||||| |||||||| ||||| || ||||||||||  |||| ||| |||| ||||||||||||    
T  23552193 aatcgaacttgagaccttgaggaggagcacactcccaggtcccaagtcaatagcactaggccaac 23552129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 37085550 - 37085614
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||||||||||| |||| ||||| || |||||||||||||||| ||  |||||||| | ||||||    
T  37085550 aatcgaacctgaaacctcgaggatgagcacactcccaaatcccaagccaataccaccatgccaac 37085614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 15281 - 15360
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccca 222  Q
    |||||||||||||| ||||||||||||||||| ||||| ||| ||||||||||||||||| ||||| || ||||||||||    
T  15281 tttgaagaagctaaattagcccacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactccca 15360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 16773925 - 16773818
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| ||||||||||||||||| ||||  ||| ||||||||||||||||| ||||| || ||||||||||  |||| ||| ||||||||     
T  16773925 tttgaagaagctaaattagcccacctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccacc 16773826  T
Q  243 aggccaac 250  Q
    || |||||    
T  16773825 agaccaac 16773818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 29173604 - 29173531
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcc 220  Q
    |||||||||| |||||||||||||||||||| |  |||||||||||||||| |||| ||||| || ||||||||    
T  29173604 aagaagctaaattagcccacctaaattgacaccagagataatcgaacctgaaacctcgaggaggagcacactcc 29173531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 29075899 - 29075796
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| |||||||| |||||||| || |  ||| |||||||| ||||| || ||||| || |||||||||| ||||| ||  |||||||||    
T  29075899 tttgaagaagctaaattagcccatctaaattggcaccagagagaatcgaacatgagatctcgaggaggagcacactcccagatcccaagccaataccact 29075800  T
Q  243 aggc 246  Q
    ||||    
T  29075799 aggc 29075796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 250
Target Start/End: Original strand, 14495766 - 14495870
Alignment:
Q  146 gaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactagg 245  Q
    |||||||||||  ||||||| |||||||| ||||  ||| |||| || ||||||||| ||||| || |||||||||| ||||| ||| |||||||| ||     
T  14495766 gaagaagctaaactagcccatctaaattggcatcggagagaatcaaatctgagacctcgaggaggagcacactcccagatcccaagtcaataccaccaga 14495865  T
Q  246 ccaac 250  Q
    |||||    
T  14495866 ccaac 14495870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 6844847 - 6844740
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    ||||||||||||||  ||  |||||||||||| ||    |||||||||||||| |||||| ||||| || ||||||||||||| || ||| ||||||||     
T  6844847 tttgaagaagctaaactaatccacctaaattggcacgagagataatcgaaccttagacctcgaggaggaacacactcccaaattccaagtcaataccacc 6844748  T
Q  243 aggccaac 250  Q
     |||||||    
T  6844747 tggccaac 6844740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 22020820 - 22020927
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    ||||||||| |||| |||||||||||||||| |||    ||| ||||||| ||||||| |  |||| || |||||||||| ||||| || ||||||||||    
T  22020820 tttgaagaaactaaattagcccacctaaattaacactggagagaatcgaatctgagacttcaaggaggagcacactcccagatcccaagctaataccact 22020919  T
Q  243 aggccaac 250  Q
    | ||||||    
T  22020920 atgccaac 22020927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 22737200 - 22737093
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| ||| |||||||||||||| |||  ||  ||||||||||||||| | | ||| || |||||| |||| |||| ||  |||||||||    
T  22737200 tttgaagaagctaaattaacccacctaaattgatatcagagggaatcgaacctgagacattggggaggagcacacttccaagtcccaagccaataccact 22737101  T
Q  243 aggccaac 250  Q
    || |||||    
T  22737100 agaccaac 22737093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 43442314 - 43442235
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccca 222  Q
    ||||||||| |||| |||||||| | ||||||||| |  ||| ||||||||||||||||| ||||| || ||||||||||    
T  43442314 tttgaagaaactaaattagcccatccaaattgacaacagagagaatcgaacctgagaccttgaggaggagcacactccca 43442235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 8278233 - 8278318
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccc 228  Q
    |||||||||||||| ||||||||||||||| | || |  |||||||| ||| ||||| || ||||| || ||||||||||| ||||    
T  8278233 tttgaagaagctaaattagcccacctaaatcggcaccggagataatcaaacttgagatctcgaggaggagcacactcccaagtccc 8278318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 24907607 - 24907542
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagagga 208  Q
    |||||| ||||||| ||||||||||||||||| ||||   ||||||||||||||||| || |||||    
T  24907607 tttgaataagctaaattagcccacctaaattggcatcaaggataatcgaacctgagaacttgagga 24907542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 25627149 - 25627068
Alignment:
Q  169 aaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    ||||||||| |  ||| ||||||||||||||||| ||||| || ||||||||||| | || ||  |||||||||||||||||    
T  25627149 aaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactcccaagttccaagccaataccactaggccaac 25627068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 1410619 - 1410724
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| |||||| |||  |||||||| |  ||| ||||||| ||||||||| ||||| || |||||||||| ||||| ||| ||||||||     
T  1410619 tttgaagaagctaaattagcctacc-caattgacaccacagagaatcgaa-ctgagacctcgaggaggagcacactcccatatcccaagtcaataccacc 1410716  T
Q  243 aggccaac 250  Q
    || |||||    
T  1410717 agaccaac 1410724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 3252247 - 3252354
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    ||||||||| |||| |||||||| |  ||||| ||||  ||| |||||||||||||| |  ||||||||   ||||||||| || | ||| |||||||||    
T  3252247 tttgaagaaactaaattagcccatccgaattggcatcagagagaatcgaacctgagagcctgaggaagagtgcactcccaagtctcaagtcaataccact 3252346  T
Q  243 aggccaac 250  Q
    ||||||||    
T  3252347 aggccaac 3252354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 35705103 - 35705045
Alignment:
Q  144 ttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacct 202  Q
    ||||||||||||| |||||||||| ||||||||| |   || |||||||||||||||||    
T  35705103 ttgaagaagctaaattagcccacccaaattgacaccggggagaatcgaacctgagacct 35705045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 87424 - 87488
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||| |||||||||||| ||||| || |||||||||| || || ||  |||||||||||||||||    
T  87424 aatcaaacctgagaccttgaggaggagcacactcccagattccaaggcaataccactaggccaac 87488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 10054165 - 10054109
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgaga 199  Q
    |||||||||||||| |||||||||| || |||| |||  ||| ||||||||||||||    
T  10054165 tttgaagaagctaaattagcccacccaagttgatatcggagagaatcgaacctgaga 10054109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 18169793 - 18169887
Alignment:
Q  144 ttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaatacca 240  Q
    ||||||||||||| ||||||||||||| ||| || |  ||| |||||||||| |||||  || || ||||||||||||| ||||| ||| |||||||    
T  18169793 ttgaagaagctaaattagcccacctaatttggca-ctgagagaatcgaacct-agaccacgaagaggaccacactcccagatcccaagtcaatacca 18169887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 18437160 - 18437096
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    ||||||||| || || | ||||| || ||||||| ||| |||| |||||||||||||||||||||    
T  18437160 aatcgaacccgaaactttgaggaggagcacactctcaagtcccaagttaataccactaggccaac 18437096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 43241655 - 43241747
Alignment:
Q  158 ttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||| ||| |||||||| ||||  ||| ||| |||||||||||||  ||||||  |||||||| | ||||| ||| ||||||||||| |||||    
T  43241655 ttagtccagctaaattggcatcgaagagaattgaacctgagacctcaaggaagggcacactccaagatcccaagtcaataccactagaccaac 43241747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 968476 - 968373
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggc 246  Q
    |||||||||| ||||||||||||||||| ||||  ||| ||||||||||||||||| ||||| || ||||||||||  |||| ||  |||||||| ||||    
T  968476 aagaagctaaattagcccacctaaattggcatcggagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggc 968377  T
Q  247 caac 250  Q
    ||||    
T  968376 caac 968373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 23361617 - 23361714
Alignment:
Q  153 ctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||| |||||||||||||||||||| |  ||| ||| ||||||||||||| ||||| || |||||||||| ||||| ||| |||||||| ||| ||||    
T  23361617 ctaaattagcccacctaaattgacaccagagagaattgaacctgagaccttgaggaggagcacactcccatatcccaagtcaataccaccaggtcaac 23361714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 3624697 - 3624591
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||| ||||||| |||||||||||||||||||  |  ||| ||||||||||||||||| || || || ||||||||||  |||| ||  |||||||||    
T  3624697 tttgaaaaagctaaattagcccacctaaattgacc-cggagagaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaataccact 3624599  T
Q  243 aggccaac 250  Q
    ||||||||    
T  3624598 aggccaac 3624591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 11819894 - 11819787
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| |||||||||| |||||||||    ||  ||||||||||||||||| ||||| || ||||||||||| |||| ||   ||||||||    
T  11819894 tttgaagaagctaaattagcccacccaaattgacactagagtgaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccact 11819795  T
Q  243 aggccaac 250  Q
    ||| ||||    
T  11819794 agggcaac 11819787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 16852458 - 16852351
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    ||||||||||||||  |||||||||||||||| ||     || ||||||||||||||||| ||||| || ||||||||||  |||| ||  |||||||||    
T  16852458 tttgaagaagctaaaatagcccacctaaattggcactaaggagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccact 16852359  T
Q  243 aggccaac 250  Q
    ||||||||    
T  16852358 aggccaac 16852351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 44780072 - 44780179
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| |||||||||| |||||||||    ||  |||| |||||||||||| ||||| || ||||||||||| |||| ||  ||| |||||    
T  44780072 tttgaagaagctaaattagcccacccaaattgacactagagggaatcaaacctgagaccttgaggaggagcacactcccaagtcccaagccaatgccact 44780171  T
Q  243 aggccaac 250  Q
    ||||||||    
T  44780172 aggccaac 44780179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 250
Target Start/End: Original strand, 35690037 - 35690129
Alignment:
Q  158 ttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||||| || |||||||||| |  ||| ||||||||||||||||| ||||| || || || |||| ||||| ||  |||||||||||||||||    
T  35690037 ttagcctacttaaattgacaccagagagaatcgaacctgagaccttgaggaggagcaaacacccagatcccaagccaataccactaggccaac 35690129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 2203610 - 2203503
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||| ||||||| |||||||||| |||||| || |   || ||| || |||||||||| ||||| || ||||||||||  |||| ||  |||||||||    
T  2203610 tttgaataagctaaattagcccacccaaattggcaccggggagaattgaccctgagaccttgaggaggagcacactcccaggtcccaagccaataccact 2203511  T
Q  243 aggccaac 250  Q
    ||||||||    
T  2203510 aggccaac 2203503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 28783178 - 28783099
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccca 222  Q
    |||||||||||||| |||||||||| |||||| || |   || |||||||| |||||||| ||||| || ||||||||||    
T  28783178 tttgaagaagctaaattagcccacccaaattggcaccgaggagaatcgaacatgagaccttgaggaggagcacactccca 28783099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 6536635 - 6536561
Alignment:
Q  146 gaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcc 220  Q
    ||||||||||| ||| ||||||||||||| || |  ||| ||| ||||||||||||| ||||| || ||||||||    
T  6536635 gaagaagctaaattaacccacctaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcc 6536561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 7347955 - 7347921
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgaca 177  Q
    |||||||||||||| ||||||||||||||||||||    
T  7347955 tttgaagaagctaaattagcccacctaaattgaca 7347921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 3305146 - 3305231
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccc 228  Q
    |||| ||||| ||| ||||||||||||||||| || |  |||||||||||  |||||||| ||||| || ||| |||||| |||||    
T  3305146 tttgcagaagataaattagcccacctaaattggcaccagagataatcgaatttgagaccttgaggaggagcacgctcccagatccc 3305231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 16843753 - 16843832
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaa 223  Q
    |||||||||||||| | |||||| ||||||||||| |  ||| |||||||||||||| || | ||| || |||||||||||    
T  16843753 tttgaagaagctaaat-agcccatctaaattgacaccggagagaatcgaacctgagatcttgcggaggagcacactcccaa 16843832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 19703488 - 19703552
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    ||||||||||||||||| ||||| || ||||||| ||  |||| ||  |||||||||||||||||    
T  19703488 aatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaac 19703552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 20994419 - 20994523
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaag-accacactcccaaatccctagttaataccactagg 245  Q
    |||||||||| |||||||| | ||||||  | |  |||||||||| |||||||| | |||| || | ||||||||||  |||| ||| ||||||||||||    
T  20994419 aagaagctaaattagcccatccaaattggtaccagagataatcgatcctgagactttgagggaggagcacactcccaggtcccaagtcaataccactagg 20994518  T
Q  246 ccaac 250  Q
    |||||    
T  20994519 ccaac 20994523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 7949412 - 7949489
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcc 220  Q
    |||||||||||||| |||||||||||||||||||| |  ||| ||||||||||||||||| ||||| || ||||||||    
T  7949412 tttgaagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactcc 7949489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 49576852 - 49576959
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||| |||||||| ||||| ||||||||||   ||| ||||||||||||||||| ||||| || ||||||||||| |||  ||  ||||||||     
T  49576852 tttgaagaagttaagttagtccacccaaattgacattggagagaatcgaacctgagaccttgaggaggagcacactcccaagtccaaagccaataccacc 49576951  T
Q  243 aggccaac 250  Q
    ||||||||    
T  49576952 aggccaac 49576959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 51954232 - 51954134
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccac 241  Q
    |||||||||||||| |||||||||| ||||||||| |  |||||||| |||||||||||| ||||| || || |||||||| |||| ||| ||| ||||    
T  51954232 tttgaagaagctaaattagcccacccaaattgacaccggagataatcaaacctgagacctcgaggaggagcatactcccaagtcccaagtcaatgccac 51954134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 21660106 - 21660209
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggc 246  Q
    |||||||||| |||| | |||||||||||||    |||||||||||| |||||||| |||||||| |||||||||| ||| | ||| |||||||| || |    
T  21660106 aagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagac 21660205  T
Q  247 caac 250  Q
    ||||    
T  21660206 caac 21660209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 21668870 - 21668973
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggc 246  Q
    |||||||||| |||| | |||||||||||||    |||||||||||| |||||||| |||||||| |||||||||| ||| | ||| |||||||| || |    
T  21668870 aagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccaccagac 21668969  T
Q  247 caac 250  Q
    ||||    
T  21668970 caac 21668973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 19680789 - 19680852
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaa 249  Q
    |||||||||| |||||| |||||||| ||||||||||| |||| ||  ||||||||||||||||    
T  19680789 aatcgaacctaagaccttgaggaagagcacactcccaagtcccaagcgaataccactaggccaa 19680852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 28635814 - 28635707
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| |||||||||| |||||| || |  ||| |||||||||| ||||||  |||| || |||||||||| ||||| ||| | ||||||     
T  28635814 tttgaagaagctaaattagcccacccaaattggcaccagagagaatcgaacctaagacctccaggaggagcacactcccagatcccaagtcagtaccacc 28635715  T
Q  243 aggccaac 250  Q
    ||| ||||    
T  28635714 aggacaac 28635707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 13015538 - 13015444
Alignment:
Q  150 aagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactag 244  Q
    ||||||| ||| |||||||||||||||| |  ||| |||||||| |||||| | ||||| || ||||||||||| |||| ||  |||||||||||    
T  13015538 aagctaaattaacccacctaaattgacacctgagagaatcgaacatgagacttcgaggaggagcacactcccaagtcccaagccaataccactag 13015444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 18404845 - 18404941
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccacta 243  Q
    ||||||||||  || ||||| |||||||||| | |||||||||||||||||||| | || || ||  | | ||||||||||| ||| ||||||||||    
T  18404845 aagaagctaaactaacccacttaaattgacaccttagataatcgaacctgagacattgatgaggagtatattcccaaatcccaagtcaataccacta 18404941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 37109352 - 37109416
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    ||||||||||||||||| ||||| || ||||||||||  |||| ||  |||||||||||||||||    
T  37109352 aatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaac 37109416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 38869843 - 38869783
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggc 246  Q
    ||||||||||||||||| ||||| || |||||||||| ||||| ||  |||||||||||||    
T  38869843 aatcgaacctgagaccttgaggaggagcacactcccagatcccaagccaataccactaggc 38869783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 37274417 - 37274496
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccca 222  Q
    |||||||||||||| ||||||||| ||||||  || |  ||| |||||||||| |||||| ||||| || ||||||||||    
T  37274417 tttgaagaagctaaattagcccacttaaattagcaccagagagaatcgaacctaagaccttgaggaggagcacactccca 37274496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 24124052 - 24124098
Alignment:
Q  182 agataatcgaacctgagacctagaggaagaccacactcccaaatccc 228  Q
    |||||||||||||| ||||||  |||| |||||||||||||||||||    
T  24124052 agataatcgaacctcagacctcaaggaggaccacactcccaaatccc 24124098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 47386750 - 47386808
Alignment:
Q  144 ttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacct 202  Q
    ||||||||||||| ||||||||||||||||||||    ||| ||| |||||||||||||    
T  47386750 ttgaagaagctaaattagcccacctaaattgacactagagagaattgaacctgagacct 47386808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 30584783 - 30584836
Alignment:
Q  146 gaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgaga 199  Q
    |||||| |||| ||||| || |||||||||||||  ||||||||||||||||||    
T  30584783 gaagaaactaaattagctcatctaaattgacatcggagataatcgaacctgaga 30584836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 30938177 - 30938278
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    ||||||||||||||  || ||||||||||||| |||    || ||||||||||||||||| ||||| || |||||||| | ||||| |   |||||||||    
T  30938177 tttgaagaagctaaactaacccacctaaattggcattggggagaatcgaacctgagacctcgaggaggagcacactccaagatcccaaaccaataccact 30938276  T
Q  243 ag 244  Q
    ||    
T  30938277 ag 30938278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 37720171 - 37720204
Alignment:
Q  142 gtttgaagaagctaagttagcccacctaaattga 175  Q
    ||||||||||||||| ||||||||||||||||||    
T  37720171 gtttgaagaagctaaattagcccacctaaattga 37720204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 250
Target Start/End: Original strand, 9936926 - 9937026
Alignment:
Q  150 aagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaa 249  Q
    ||||||| ||| |||||| ||||||||| |   || |||||||||||| || | ||||| || ||||||||||| || | |||  |||||||||||||||    
T  9936926 aagctaaattaacccacccaaattgacaacggtgagaatcgaacctgaaacttcgaggaggagcacactcccaagtctcaagtcgataccactaggccaa 9937025  T
Q  250 c 250  Q
    |    
T  9937026 c 9937026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 19238578 - 19238642
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    ||||||||| ||||||| ||||| || ||||||||||| |||| ||  |||||||| ||||||||    
T  19238578 aatcgaacccgagacctcgaggaggagcacactcccaagtcccaagccaataccaccaggccaac 19238642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 42644907 - 42644963
Alignment:
Q  182 agataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaatac 238  Q
    ||||||||||||||||||| | |||||||| ||||||| || ||||| ||| |||||    
T  42644907 agataatcgaacctgagactttgaggaagaacacactctcagatcccaagtcaatac 42644963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 33549218 - 33549143
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccca 222  Q
    |||||||||| ||||| ||||||||||| ||||| ||| ||||||||||||||||| ||||| || ||||||||||    
T  33549218 aagaagctaaattagctcacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactccca 33549143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 6758380 - 6758487
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| || ||||||||||||||||| |  ||| |||||| | |||||||| ||||  || |||||||||||||||  ||  ||||||||     
T  6758380 tttgaagaagctaaatttgcccacctaaattgacaccagagagaatcgatcttgagacctcgaggtggagcacactcccaaatcctaagccaataccacc 6758479  T
Q  243 aggccaac 250  Q
    ||||||||    
T  6758480 aggccaac 6758487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 12234469 - 12234572
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggc 246  Q
    |||||||||| ||| |||| |||||||||||    ||| ||||||||||||||||| |||   || ||||||||||  |||| ||| |||||||| ||||    
T  12234469 aagaagctaaattatcccatctaaattgacactggagagaatcgaacctgagacctcgagagggagcacactcccaggtcccaagtcaataccaccaggc 12234568  T
Q  247 caac 250  Q
    ||||    
T  12234569 caac 12234572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 12633124 - 12633033
Alignment:
Q  146 gaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaata 237  Q
    ||||||||||| |||| |||| |||||||||||   ||| |||||||| ||||| || || || || |||||||||||||||| ||| ||||    
T  12633124 gaagaagctaaattagtccacttaaattgacattggagagaatcgaacatgagatctcgaagaggagcacactcccaaatcccaagtcaata 12633033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 28364055 - 28363948
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||  ||| |||||||| | ||||||||| |  ||||||||||| ||||||||| ||||| || ||||||| || ||||| |   |||||||||    
T  28364055 tttgaagaaattaaattagcccatccaaattgacaccagagataatcgaatctgagaccttgaggaggagcacactcgcagatcccaaaccaataccact 28363956  T
Q  243 aggccaac 250  Q
    | ||||||    
T  28363955 atgccaac 28363948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 31622949 - 31623028
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccca 222  Q
    |||||||||||||| |||||||||| ||||||||| |  ||  | || |||||||||||| ||||| || ||||||||||    
T  31622949 tttgaagaagctaaattagcccacccaaattgacaccggagtgattcaaacctgagacctcgaggaggagcacactccca 31623028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 12216847 - 12216803
Alignment:
Q  158 ttagcccacctaaattgacatcctagataatcgaacctgagacct 202  Q
    ||||||||||||||||||||  | ||| |||||||||||||||||    
T  12216847 ttagcccacctaaattgacagtcaagagaatcgaacctgagacct 12216803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 14558080 - 14558005
Alignment:
Q  142 gtttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacact 218  Q
    ||||||||||||||| |||| ||||| ||||||||| ||  || ||||||||||||||||  ||||| || ||||||    
T  14558080 gtttgaagaagctaaattagaccacccaaattgaca-ccgggagaatcgaacctgagacccggaggaggagcacact 14558005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 41591 - 41698
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||| ||||| |||||||||| |||||||||||  ||| ||| ||||||||||||| ||||| || || |||| || ||| | ||  |||||||||    
T  41591 tttgaagaggctaaattagcccacccaaattgacatcagagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaataccact 41690  T
Q  243 aggccaac 250  Q
    ||||||||    
T  41691 aggccaac 41698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 29503388 - 29503282
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| || |||||| |||||||||| ||  || ||||||||||||||||| ||||| || ||||||||||  |||| |   |||||||||    
T  29503388 tttgaagaagctaaatttgcccacttaaattgaca-ccgggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaataccact 29503290  T
Q  243 aggccaac 250  Q
    ||||||||    
T  29503289 aggccaac 29503282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 42327357 - 42327460
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggc 246  Q
    |||| ||||| |||||||||| |||||| || |  ||| ||||||||||||||||| ||||| || ||||||||||  |||| ||  |||||||||||||    
T  42327357 aagatgctaaattagcccacccaaattggcaccgaagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggc 42327456  T
Q  247 caac 250  Q
    ||||    
T  42327457 caac 42327460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 25637269 - 25637184
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccc 228  Q
    |||||||||| ||| ||||||||||||||||| ||||  ||| || |||||||||||||| ||| | || |||||||||| |||||    
T  25637269 tttgaagaagttaaattagcccacctaaattggcatcggagagaaccgaacctgagacctcgagaaggagcacactcccagatccc 25637184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 38854420 - 38854485
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagagga 208  Q
    |||||||||||||| |||||||||||||||||||  |   |||||||||||||||||||| |||||    
T  38854420 tttgaagaagctaaattagcccacctaaattgaccccggtgataatcgaacctgagaccttgagga 38854485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 33582091 - 33582015
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactc 219  Q
    |||||||||||||| |||| ||||||||||||||||   ||| |||||||||||||||||  |||| || |||||||    
T  33582091 tttgaagaagctaaattagtccacctaaattgacattagagagaatcgaacctgagacctcaaggaggagcacactc 33582015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 1435181 - 1435075
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| |||||||||| ||||||||| |  ||| ||||||| ||||||||| |||||  | |||||||| ||||||| ||  | |||||||    
T  1435181 tttgaagaagctaaattagcccacccaaattgacaccagagagaatcgaa-ctgagaccttgaggagaagcacactcctaaatcccaagccagtaccact 1435083  T
Q  243 aggccaac 250  Q
    | ||||||    
T  1435082 atgccaac 1435075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 11251205 - 11251098
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||| ||| ||| ||||| |||||||||||||| |  ||| |||| |||||||||||| ||||| || |||||| |||| |||| ||  |||||||||    
T  11251205 tttgaataagttaaattagcacacctaaattgacaccagagagaatcaaacctgagaccttgaggaggagcacacttccaagtcccaagccaataccact 11251106  T
Q  243 aggccaac 250  Q
    | ||||||    
T  11251105 aagccaac 11251098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 42602672 - 42602565
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| |||||||||| |||||| || |  ||| |||| ||||| |||||| ||| | || ||||||||||  |||| ||  |||||||||    
T  42602672 tttgaagaagctaaattagcccacccaaattggcaccggagagaatcaaacctaagaccttgagaaggagcacactcccaggtcccaagccaataccact 42602573  T
Q  243 aggccaac 250  Q
    ||||||||    
T  42602572 aggccaac 42602565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 28846805 - 28846708
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactag 244  Q
    |||||| ||| |||| | ||| |||||||||||   |||||||||||||||||| | ||||| || ||||||||||  |||| ||| |||||||||||    
T  28846805 aagaagttaaattagtctacccaaattgacatcggtgataatcgaacctgagacatcgaggaggagcacactcccaggtcccaagtcaataccactag 28846708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 38856120 - 38856185
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagagga 208  Q
    |||||||||||||| |||||||| | |||| |||| | ||||||||||||| |||||||| |||||    
T  38856120 tttgaagaagctaaattagcccatcgaaatggacaccgtagataatcgaacatgagaccttgagga 38856185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 31573600 - 31573656
Alignment:
Q  144 ttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagac 200  Q
    ||||||||| ||| |||| |||||||||||||||||  ||| |||||||||||||||    
T  31573600 ttgaagaagttaaattagtccacctaaattgacatcgaagagaatcgaacctgagac 31573656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 35203341 - 35203417
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactc 219  Q
    |||||||||||||| ||| ||||| |||||||||| |  |||||||||||| |||||| | ||||| || |||||||    
T  35203341 tttgaagaagctaaattaacccacttaaattgacaccaaagataatcgaacatgagactttgaggatgagcacactc 35203417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 3001493 - 3001390
Alignment:
Q  147 aagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggc 246  Q
    ||||| |||| ||||||||| |||| || || |  |||||||||||||||||| ||  |||| || |||||||| | ||| | ||| |||||||||||||    
T  3001493 aagaacctaaattagcccacataaactggcaccagagataatcgaacctgagatctcaaggaggagcacactcctagatctcaagtcaataccactaggc 3001394  T
Q  247 caac 250  Q
    ||||    
T  3001393 caac 3001390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 14500352 - 14500289
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaa 249  Q
    ||||||| ||||||||||||||| || |||||||||| ||| | || | |||||||||||||||    
T  14500352 aatcgaatctgagacctagaggaggagcacactcccagatctcaagcttataccactaggccaa 14500289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 2311842 - 2311777
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagagga 208  Q
    ||||||||||| || |||||||||  ||||||||| |  ||| ||||||||||||||||| |||||    
T  2311842 tttgaagaagccaaattagcccactcaaattgacaccgaagaaaatcgaacctgagacctcgagga 2311777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 37972013 - 37971956
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagac 200  Q
    |||| ||||||||| ||||||||||||||||| || |  ||| |||||||||||||||    
T  37972013 tttgtagaagctaaattagcccacctaaattggcaccggagagaatcgaacctgagac 37971956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 41908596 - 41908673
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcc 220  Q
    ||||||||||||||  ||||||||| |||||| || |   ||||||||||| |||||||| ||||| || ||||||||    
T  41908596 tttgaagaagctaaactagcccacccaaattggcaccggggataatcgaacttgagaccttgaggaggagcacactcc 41908673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 4438980 - 4439044
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||||||| || ||||| ||||| || ||||||| || ||||| ||||||||||| |||||||||    
T  4438980 aatcgaacatgcgaccttgaggaggagcacactctcagatcccaagttaataccattaggccaac 4439044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 23052524 - 23052588
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    ||||||||||||||||| |||||  | ||||||||||| |||| ||  |||||||| ||||||||    
T  23052524 aatcgaacctgagaccttgaggagaagcacactcccaagtcccaagccaataccaccaggccaac 23052588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 34041589 - 34041653
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    |||| |||||||||||| ||||| || ||||||| || ||||  ||| |||||||||||||||||    
T  34041589 aatcaaacctgagaccttgaggaggagcacactctcagatcctaagtcaataccactaggccaac 34041653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 39715067 - 39715003
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    ||||||||||||||||| ||||| || ||||||||||  |||| ||| |||||||| | ||||||    
T  39715067 aatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccatgccaac 39715003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 13021 - 13083
Alignment:
Q  160 agcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactccca 222  Q
    |||||||| |||||||||||  ||| ||||||||||||||||| ||||| || ||||||||||    
T  13021 agcccacccaaattgacatcggagagaatcgaacctgagaccttgaggaggagcacactccca 13083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 6880 - 6984
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    |||||||||||||| |||||||||  ||||||||| |  ||   |||||||||||||| | ||||| || ||||||||| | |||| ||  |||||||||    
T  6880 tttgaagaagctaaattagcccactcaaattgacaccagag---atcgaacctgagactttgaggaggagcacactccccagtcccaagccaataccact 6976  T
Q  243 aggccaac 250  Q
    ||||||||    
T  6977 aggccaac 6984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 42622 - 42687
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagagga 208  Q
    |||||||||| ||| |||||||||||||||||||| | |||| |||||||| ||||| || |||||    
T  42622 tttgaagaagttaaattagcccacctaaattgacaccatagagaatcgaacttgagatcttgagga 42687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 24168 - 24064
Alignment:
Q  146 gaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactagg 245  Q
    ||||||| ||| |||||||||  |||||| ||||  |||||||||||||||| || | || || || |||||||| || |||| ||| ||||||| ||||    
T  24168 gaagaagttaaattagcccactcaaattggcatcagagataatcgaacctgacacttcgaagaggagcacactcctaagtcccaagtcaataccattagg 24069  T
Q  246 ccaac 250  Q
    |||||    
T  24068 ccaac 24064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 8639 - 8685
Alignment:
Q  182 agataatcgaacctgagacctagaggaagaccacactcccaaatccc 228  Q
    |||||||||||||| ||||||  |||| |||||||||||||||||||    
T  8639 agataatcgaacctcagacctcaaggaggaccacactcccaaatccc 8685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 11603 - 11541
Alignment:
Q  186 aatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggcca 248  Q
    ||||||||||||||||| ||||| || |||||||||| ||||| ||  |||||||| ||||||    
T  11603 aatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaataccaccaggcca 11541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 25305 - 25406
Alignment:
Q  143 tttgaagaagctaagttagcccacctaaattgacatcctagataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccact 242  Q
    ||||||||||||||  |||| ||   ||||||||| |  ||||||||||||||||||||| ||| | || ||||||||||| || | ||  |||||||||    
T  25305 tttgaagaagctaaaatagctcattcaaattgacaccagagataatcgaacctgagaccttgagaaggagcacactcccaagtctcaagccaataccact 25404  T
Q  243 ag 244  Q
    ||    
T  25405 ag 25406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 250
Target Start/End: Original strand, 94968 - 95036
Alignment:
Q  182 agataatcgaacctgagacctagaggaagaccacactcccaaatccctagttaataccactaggccaac 250  Q
    ||||||| ||||||||||||| ||||| || ||||||||||  | || ||  |||||||||||||||||    
T  94968 agataattgaacctgagaccttgaggaggagcacactcccaggttccaagccaataccactaggccaac 95036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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