View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10108_low_27 (Length: 239)
Name: NF10108_low_27
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7743676 - 7743899
Alignment:
| Q |
1 |
tcttaatttgtcacctaatttatatccctttcaacaggtagttaatgttgataatgtacggcagaaggttaccgtgaaactaattccgaggatagattta |
100 |
Q |
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| T |
7743676 |
tcttaatttgtcacctaatttatatccctttcaacaggtagtgaatgttgataatgtacggcagaaggttaccgtgaaactaattccgaggatagattta |
7743775 |
T |
|
| Q |
101 |
caagctctcgcaaacaaattggtatgaaatgtttctgtcctgttgaatgcatgatttttattgttgaatgtttaatttcgttgaaaattggagtctccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7743776 |
caagctctcgcaaacaaattggtatgaaatgtttctgtcctgttgaatgcatgatttttattgttgaatgtttaatttcgttgaaaattggagtctccat |
7743875 |
T |
|
| Q |
201 |
ttctttacaaaatgtatttgtcat |
224 |
Q |
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|| ||||||||||||||||||||| |
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| T |
7743876 |
ttatttacaaaatgtatttgtcat |
7743899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40865207 - 40865430
Alignment:
| Q |
1 |
tcttaatttgtcacctaatttatatccctttcaacaggtagttaatgttgataatgtacggcagaaggttaccgtgaaactaattccgaggatagattta |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
40865207 |
tcttaatttgtcacctaatttatatccctt-caacaggtagtggatgttgataatgtacggcagagggttagagtgaaactaattccgaggatagattta |
40865305 |
T |
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| Q |
101 |
caagctctcgcaaacaaattggtatgaaatgtttctgtcctgttgaatgcatgatttttattgttgaatgtttaatttcgttgaaaattggagtctcca- |
199 |
Q |
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|| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||| || |
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| T |
40865306 |
caggctctcgcaaacaaattggtatggaatgtttctgtcttgttgaatgcatgatttgtattgttgaattgttaatttcgttgaaaattcgagtccacat |
40865405 |
T |
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| Q |
200 |
tttctttacaaaatgtatttgtcat |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
40865406 |
tttctttacaaaatgtatttgtcat |
40865430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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