View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10108_low_3 (Length: 480)
Name: NF10108_low_3
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 11 - 464
Target Start/End: Original strand, 38986873 - 38987327
Alignment:
| Q |
11 |
cataggagtggaaaagtaaatctcaaaaaataaataaagagtatgatgggccaaacccgcaattagaaccgaaaattttggccctaaaccataaataaat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
38986873 |
cataggagtggaaaagtaaatctcaaaaaataaataaagagtaagatgggccaaacccgcgattagaactgagaattttggccctaaaccataaataaat |
38986972 |
T |
|
| Q |
111 |
aaatagatagaataaaaagtgagtt-cggcaattgctgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtg |
209 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38986973 |
aaatagatagaataaaaagtgagtttcggcaattgctgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtg |
38987072 |
T |
|
| Q |
210 |
aaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgaccaatcttggtatccttgatgatgttgagaaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38987073 |
aaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgaccaatcttggtatccttgatgatgttgagaaaa |
38987172 |
T |
|
| Q |
310 |
tcatatacgacgttgatcaaggtttttctttctgtttcaatataacatcttgtgcttggtattttgcgacacttataggggacatagttcctgtcaagtc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38987173 |
tcatatacgacgttgatcaaggtttttctttctgtttcaatataatatcttgtgcttggtattttgcgacacttataggggacatagttcctgtcaagtc |
38987272 |
T |
|
| Q |
410 |
taattgggctatgattattcctagaactgaaagataccttttttctgttgaaatc |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38987273 |
taattgggctatgattattcctagaactgaaagataccttttttctgttgaaatc |
38987327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 160 - 464
Target Start/End: Original strand, 39725745 - 39726049
Alignment:
| Q |
160 |
aattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttgga |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39725745 |
aattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttgga |
39725844 |
T |
|
| Q |
260 |
gcagatcagcgttatgaccaatcttggtatccttgatgatgttgagaaaatcatatacgacgttgatcaaggtttttctttctgtttcaatataacatct |
359 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39725845 |
gcagatcagcgttatgaccaatcttgctatcgttgatcgtgttgagagaatcatatacgacgttgatcaaggtttttctttctgtttcaatataacatct |
39725944 |
T |
|
| Q |
360 |
tgtgcttggtattttgcgacacttataggggacatagttcctgtcaagtctaattgggctatgattattcctagaactgaaagataccttttttctgttg |
459 |
Q |
| |
|
||||||||| ||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39725945 |
tgtgcttggcattttgcgagacttataggggaaatagttcctgtcaagtctgcttgggctatgattattcctagaactgaaagataccttttttctgttg |
39726044 |
T |
|
| Q |
460 |
aaatc |
464 |
Q |
| |
|
||||| |
|
|
| T |
39726045 |
aaatc |
39726049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 146 - 452
Target Start/End: Original strand, 39879125 - 39879439
Alignment:
| Q |
146 |
tgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtgg---cgttctgttgt---gaaagttcgtcaacaacatgtttctcaactt |
239 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||||||| ||| || |
|
|
| T |
39879125 |
tgcaattgcaaagaaattaggtcaaagagtggagaagatggaggaagggtggtggcgttctgttgttgtgaatgttcgtcaacaacatgtttgtcagctg |
39879224 |
T |
|
| Q |
240 |
cgtactgtctttcatttggagcagatcagcgttatgaccaatcttggtatccttgatgatgttgagaaaatcatatacgacgttgatcaaggtttttctt |
339 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||| |||| |||||| | || | | | | ||| ||||| ||||||| ||||| |||||||||||| |
|
|
| T |
39879225 |
cgtactttctttcatttggagcagatcagcgttttgaacaattttggtaccgttcgtaaagctaagagaatcaaatacgacattgatgaaggtttttctt |
39879324 |
T |
|
| Q |
340 |
tctgtttcaatataacatcttgtgcttggtattttgcgacacttataggggacatagttcc--tgtcaagtctaattgggctatgattattcctagaact |
437 |
Q |
| |
|
|||||||| | ||||||||| ||||||| |||||| | |||||| | | | ||| |||| |||||||| | |||||| ||||||| ||||| || | |
|
|
| T |
39879325 |
tctgtttccgtttaacatcttatgcttgggattttgtggaacttattgagaaaatacttcctgtgtcaagtttgattgggatatgattcttcctgaaagt |
39879424 |
T |
|
| Q |
438 |
gaaagataccttttt |
452 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
39879425 |
gaaatataccttttt |
39879439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 146 - 452
Target Start/End: Original strand, 40411830 - 40412144
Alignment:
| Q |
146 |
tgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtgg---cgttctgttgt---gaaagttcgtcaacaacatgtttctcaactt |
239 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||||||| ||| || |
|
|
| T |
40411830 |
tgcaattgcaaagaaattaggtcaaagagtggagaagatggaggaagggtggtggcgttctgttgttgtgaatgttcgtcaacaacatgtttgtcagctg |
40411929 |
T |
|
| Q |
240 |
cgtactgtctttcatttggagcagatcagcgttatgaccaatcttggtatccttgatgatgttgagaaaatcatatacgacgttgatcaaggtttttctt |
339 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||| |||| |||||| | || | | | | ||| ||||| ||||||| ||||| |||||||||||| |
|
|
| T |
40411930 |
cgtactttctttcatttggagcagatcagcgttttgaacaattttggtaccgttcgtaaagctaagataatcaaatacgacattgatgaaggtttttctt |
40412029 |
T |
|
| Q |
340 |
tctgtttcaatataacatcttgtgcttggtattttgcgacacttataggggacatagttcc--tgtcaagtctaattgggctatgattattcctagaact |
437 |
Q |
| |
|
|||||||| | ||||||||| ||||||| |||||| | |||||| | | | ||| |||| |||||||| | |||||| ||||||| ||||| || | |
|
|
| T |
40412030 |
tctgtttccgtttaacatcttatgcttgggattttgtggaacttattgagaaaatacttcctgtgtcaagtttgattgggatatgattcttcctgaaagt |
40412129 |
T |
|
| Q |
438 |
gaaagataccttttt |
452 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
40412130 |
gaaatataccttttt |
40412144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 146 - 290
Target Start/End: Complemental strand, 1164476 - 1164332
Alignment:
| Q |
146 |
tgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtact |
245 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||| |||||||||| |||| |||||| |||||||||| ||||||||||||||||||||| |||| |||||| |
|
|
| T |
1164476 |
tgcaattggaaaaaaattaggtcagaaagtgtcgaagatggaggaaggatggcgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtact |
1164377 |
T |
|
| Q |
246 |
gtctttcatttggagcagatcagcgttatgaccaatcttggtatc |
290 |
Q |
| |
|
| ||||||||||||||| |||||||| || | ||||||||||| |
|
|
| T |
1164376 |
ttgtttcatttggagcaggtcagcgtttggaaccatcttggtatc |
1164332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 351
Target Start/End: Original strand, 1849323 - 1849495
Alignment:
| Q |
179 |
gaagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgacc |
278 |
Q |
| |
|
|||||||||| |||||| || |||||||||| ||||||||||||||||||||| |||| |||||| | ||||||||||||||| |||||||| || | |
|
|
| T |
1849323 |
gaagatggaggaagggttttgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgtttcgaac |
1849422 |
T |
|
| Q |
279 |
aatcttggtatccttgatgatgttgagaaaatcatatacgacgttgatcaaggtttttctttctgtttcaata |
351 |
Q |
| |
|
|||| ||||||||||| | || || ||||| |||| || | ||| ||||||| |||||||||||||||| |
|
|
| T |
1849423 |
catctcggtatccttgaaaagattcggagaatcaaatacaacatcgatgaaggtttgtctttctgtttcaata |
1849495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 3298832 - 3298936
Alignment:
| Q |
180 |
aagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgacca |
279 |
Q |
| |
|
||||||||| |||||||| | |||| |||| ||||||||||||||||||| |||||| |||||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
3298832 |
aagatggaggaagggtgggttggtgttttgaatgttcgtcaacaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggacca |
3298931 |
T |
|
| Q |
280 |
atctt |
284 |
Q |
| |
|
||||| |
|
|
| T |
3298932 |
atctt |
3298936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 3391725 - 3391826
Alignment:
| Q |
180 |
aagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgacca |
279 |
Q |
| |
|
||||||||| |||||||| | |||| |||| ||||||||||||||||||| |||||| |||||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
3391725 |
aagatggaggaagggtgggttggtgttttgaatgttcgtcaacaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggacca |
3391824 |
T |
|
| Q |
280 |
at |
281 |
Q |
| |
|
|| |
|
|
| T |
3391825 |
at |
3391826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 464
Target Start/End: Original strand, 40417805 - 40417917
Alignment:
| Q |
352 |
taacatcttgtgcttggtattttgcgacacttataggggacatagttcctgtcaagtctaattgggctatgattattcctagaactgaaagatacctttt |
451 |
Q |
| |
|
||||||||| ||||||| |||||| || |||||||||||| ||| ||||||||| || | |||||| ||||||| |||| || ||||||||||||||| |
|
|
| T |
40417805 |
taacatcttttgcttggcattttgtgaaacttataggggaaatacttcctgtcaggtttgattgggatatgattcctcctgaaagtgaaagatacctttt |
40417904 |
T |
|
| Q |
452 |
ttctgttgaaatc |
464 |
Q |
| |
|
| |||||||||| |
|
|
| T |
40417905 |
tcgtgttgaaatc |
40417917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 39168281 - 39168340
Alignment:
| Q |
203 |
tgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatc |
266 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | |||| |||||||||||||||||||| |
|
|
| T |
39168281 |
tgttgtgaaggttcgtcaacaacatgtttctcatc----tactttctttcatttggagcagatc |
39168340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 39874044 - 39874097
Alignment:
| Q |
57 |
tgggccaaacccgcaattagaaccgaaaattttggccctaaaccataaataaat |
110 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||||||||||| | |||||||| |
|
|
| T |
39874044 |
tgggccaaacccgcgattagaactgaaaattctggccctaaacaacaaataaat |
39874097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 161 - 425
Target Start/End: Complemental strand, 25913058 - 25912787
Alignment:
| Q |
161 |
attaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtgaaagttc--gtcaacaacatgtttctcaacttcgtactgtctttcatttgg |
258 |
Q |
| |
|
||||||||||||| || ||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||| |||||| |||||| |||||||||||| |
|
|
| T |
25913058 |
attaggtcaaaaaatgaagaagatggaggaagggtggcgctctgttgtgaatgttctcgtcaacaacatgtttgtcaactgcgtactttctttcatttgg |
25912959 |
T |
|
| Q |
259 |
agcagatcagcgttatgaccaatcttggt--atccttgatgatgttgagaaaa---tcatatacgacgttgatcaaggtttttctttctgtttcaatata |
353 |
Q |
| |
|
||||||||||||||| || || || | | | || | ||| | ||| || ||| ||||||| ||||| |||||||||| ||||||||| || | |
|
|
| T |
25912958 |
agcagatcagcgttacgagacattttaatacaccgttcgtaatgctaagagaatattcaaatacgacattgatgaaggtttttccttctgtttccgtaga |
25912859 |
T |
|
| Q |
354 |
acatcttgtgcttggtattttgcgacacttataggggacatagttcctgtcaagtctaattgggctatgatt |
425 |
Q |
| |
|
||||||| ||| ||| |||||| || |||||||||||||||||||||||||| || | |||||| ||||||| |
|
|
| T |
25912858 |
acatcttttgcatggcattttgtgaaacttataggggacatagttcctgtcaggtttcattgggatatgatt |
25912787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 55345777 - 55345733
Alignment:
| Q |
156 |
aagaaattaggtcaaaaagtggagaagatggagcaagggtggcgt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
55345777 |
aagaaattaggtcaaagagtggagaatatggaggaagggtggcgt |
55345733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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