View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10108_low_31 (Length: 218)
Name: NF10108_low_31
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 21787917 - 21788101
Alignment:
| Q |
16 |
taattaacctgcacatcatgtgattacatccattaatcctctcgacatagatagagcaacttggacatcttttccacctttctctttttgccaactccaa |
115 |
Q |
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| T |
21787917 |
taattaacctgcacatcatgtgattacatccattaattctctcgacatagaaagagcaccttggacattttttccaactttctctttttgccaactccaa |
21788016 |
T |
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| Q |
116 |
aaatttcatatccaattcaatattttgaataaatttccggccataagacattaacttaaagggaatagaagacttatgaattaaa |
200 |
Q |
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| T |
21788017 |
aaatttcatatccaattcaatattttgaattaatttccggccataagacattaacttaaagggaatagaagacttatgaattaaa |
21788101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 21794605 - 21794804
Alignment:
| Q |
1 |
gataaaatgcataattaattaacctgcacatcatgtgattacatccattaatcctctcgacatagatagagcaacttggacatcttttccacctttctct |
100 |
Q |
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| T |
21794605 |
gataaaatgcataattaattaacctgcacatcatgtgattacatccattaattctctcgacatagatagagcaacttggacatcttttccacctttctct |
21794704 |
T |
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| Q |
101 |
ttttgccaactccaaaaatttcatatccaattcaatattttgaataaatttccggccataagacattaacttaaagggaatagaagacttatgaattaaa |
200 |
Q |
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| T |
21794705 |
ttttgccaactccaaaaatttcttatccaatttaaaattttgaaataatttccgggcataagacatgaatttgaaggtaatagaagactcataaattaaa |
21794804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 25013570 - 25013519
Alignment:
| Q |
76 |
ttggacatcttttccacctttctctttttgccaactccaaaaatttcatatc |
127 |
Q |
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| T |
25013570 |
ttggacatcttttccacttttctcttttagccaactccaaaaacttcctatc |
25013519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 24976369 - 24976469
Alignment:
| Q |
21 |
aacctgcacatcatgtgattacatccattaatcctctcgacatagatagagcaacttggacatcttttccacctttctctttttgccaactccaaaaatt |
120 |
Q |
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| T |
24976369 |
aacctgcatttcatgtgttcacatccatcacttctcttgacatagatagagcaatttgggcatctctgccacttctttctgttagccaactccaaaaatt |
24976468 |
T |
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| Q |
121 |
t |
121 |
Q |
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| T |
24976469 |
t |
24976469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 21792633 - 21792768
Alignment:
| Q |
54 |
ctctcgacatagatagagcaacttggacatcttttccacctttctctttttgccaactccaaaaatttcatatccaattcaatattttgaataaatttcc |
153 |
Q |
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| T |
21792633 |
ctctcgatatagaaagagcacttaggacatcttctccacctttctttttttgccaacttcactaaactcttgtccaatttaaaattttgaaataatttcc |
21792732 |
T |
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| Q |
154 |
ggccataagacattaacttaaagggaatagaagact |
189 |
Q |
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| T |
21792733 |
tggcgtaagatatgaacttcaaggagatagaagact |
21792768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 24991154 - 24991103
Alignment:
| Q |
76 |
ttggacatcttttccacctttctctttttgccaactccaaaaatttcatatc |
127 |
Q |
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| T |
24991154 |
ttggacatctcttccacttttctcttttagccaactccaaaaacttcctatc |
24991103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 25014691 - 25014640
Alignment:
| Q |
76 |
ttggacatcttttccacctttctctttttgccaactccaaaaatttcatatc |
127 |
Q |
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| T |
25014691 |
ttggacatctcttccacttttctcttttagccaactccaaaaacttcctatc |
25014640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 24930508 - 24930438
Alignment:
| Q |
21 |
aacctgcacatcatgtgattacatccattaatcctctcgacatagatagagcaacttggacatcttttcca |
91 |
Q |
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| T |
24930508 |
aacctgcatttcatgtgttcacatccactacttctcttgacatagatagagcaatttggacatctcttcca |
24930438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 26104507 - 26104432
Alignment:
| Q |
54 |
ctctcgacatagatagagcaacttggacatcttttccacctttctctttttgccaactccaaaaatttcatatcca |
129 |
Q |
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| T |
26104507 |
ctctggacatacatagagcatcttggacatctctgccatttttctcttttagccaactccaaaaatttcatatcca |
26104432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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