View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10108_low_4 (Length: 468)

Name: NF10108_low_4
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10108_low_4
NF10108_low_4
[»] chr4 (1 HSPs)
chr4 (12-453)||(33399461-33399902)


Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 12 - 453
Target Start/End: Complemental strand, 33399902 - 33399461
Alignment:
Q  12 caaaggtaaaaggttgtcttcaaattgaacagtggtgtctctgtccgatatagtgtttaaggggcggttgatgggatgagcgatttggtgaatgtaggct 111  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33399902 caaaggtagaaggttgtcttcaaattcaacagtggtgtctctgtccgatatagtgtttaaggggcggttgatgggatgagcgatttggtgattgtaggct 33399803  T
Q  112 agatcgtaaacgacattacaagttcaaggaatggatagtatcgagaaaaagaagttttgtgatgattgagtagtactattgcagaagaggtgttgatgct 211  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33399802 agattgtaaacgacattacaagttcaaggaatggatagtatcgagaaaaagaagttttgtgatgattgagtagtactattgcagaagaggtgttgatgct 33399703  T
Q  212 aagtattttgttgagcagtagcagtgcatactcaattatgggcaaaggatgttggtgcaagtaaggcgttgtaggagcaagttgtgtccaaaaaatggga 311  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33399702 aattattttgttgagcagtagcagtgcatactcaattatgggcaaaggatgttggtgcaagtaaggcgttgtaggagcaagttgtgtccaaaaaatggga 33399603  T
Q  312 agactggttttaggaaagcagaaagaagacattatgtagaactttggaacattgacttcagctgaagggagtcaagtatttatccaatgcaagaaataag 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33399602 agactggttttaggaaagcagaaagaagacattatgtagaactttggaacattgacttcagctaaagggagtcaagtatttatccaatgcaagaaataag 33399503  T
Q  412 gatgtcaaggtt-atggtttattttgtgatgattggatgttat 453  Q
    | |||||||||| |||||| |||||||||||||||||||||||    
T  33399502 ggtgtcaaggtttatggtt-attttgtgatgattggatgttat 33399461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University