View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10108_low_4 (Length: 468)
Name: NF10108_low_4
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 12 - 453
Target Start/End: Complemental strand, 33399902 - 33399461
Alignment:
| Q |
12 |
caaaggtaaaaggttgtcttcaaattgaacagtggtgtctctgtccgatatagtgtttaaggggcggttgatgggatgagcgatttggtgaatgtaggct |
111 |
Q |
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| T |
33399902 |
caaaggtagaaggttgtcttcaaattcaacagtggtgtctctgtccgatatagtgtttaaggggcggttgatgggatgagcgatttggtgattgtaggct |
33399803 |
T |
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| Q |
112 |
agatcgtaaacgacattacaagttcaaggaatggatagtatcgagaaaaagaagttttgtgatgattgagtagtactattgcagaagaggtgttgatgct |
211 |
Q |
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| T |
33399802 |
agattgtaaacgacattacaagttcaaggaatggatagtatcgagaaaaagaagttttgtgatgattgagtagtactattgcagaagaggtgttgatgct |
33399703 |
T |
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| Q |
212 |
aagtattttgttgagcagtagcagtgcatactcaattatgggcaaaggatgttggtgcaagtaaggcgttgtaggagcaagttgtgtccaaaaaatggga |
311 |
Q |
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| T |
33399702 |
aattattttgttgagcagtagcagtgcatactcaattatgggcaaaggatgttggtgcaagtaaggcgttgtaggagcaagttgtgtccaaaaaatggga |
33399603 |
T |
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| Q |
312 |
agactggttttaggaaagcagaaagaagacattatgtagaactttggaacattgacttcagctgaagggagtcaagtatttatccaatgcaagaaataag |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33399602 |
agactggttttaggaaagcagaaagaagacattatgtagaactttggaacattgacttcagctaaagggagtcaagtatttatccaatgcaagaaataag |
33399503 |
T |
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| Q |
412 |
gatgtcaaggtt-atggtttattttgtgatgattggatgttat |
453 |
Q |
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| T |
33399502 |
ggtgtcaaggtttatggtt-attttgtgatgattggatgttat |
33399461 |
T |
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