View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10108_low_5 (Length: 466)
Name: NF10108_low_5
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 450
Target Start/End: Complemental strand, 39026471 - 39026035
Alignment:
| Q |
14 |
agaccatgtgcatgagatattattatatttataagaggttatgcatggtgtgtgacgtgttacattaatcattttatcattaaaaagctaagtataggta |
113 |
Q |
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| T |
39026471 |
agaccatgtgcataagatattattatatttataagaggttatgcatggtgtgtgacgtgttacattaatcattttatcattaaaaagctaagtataggta |
39026372 |
T |
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| Q |
114 |
cagtagtttaagggatatagttaaaactagaattgtgaggactcgtgggatttggggtatgagctgtgaaagagagggaaaagtgaggacttcttgtgaa |
213 |
Q |
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| T |
39026371 |
cagtagtttaagggatatagttaaaactagaattgtgaggactcgtgggatttggggtatgagctgtgaaagagagggaaaagtgaggacttcctgtgaa |
39026272 |
T |
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| Q |
214 |
gatcatgttatgctcccatgtgaattgtttgcatgcactatatgctttctttgctttgtccccaaaccattcccacatgtagggtatatgctctctttct |
313 |
Q |
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| T |
39026271 |
gatcatgttatgcttccatgtgaattgtttgcatgcactatttgctttctttgctttgtccccaaaccattcccacatgtagggtatatgctctctttct |
39026172 |
T |
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| Q |
314 |
ctctatgtggatatgcatatatgtctttcttggtaccttcttctatcatcatcttatcttaacttgaattaatttagttttataaggaggtaaaagtttg |
413 |
Q |
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| T |
39026171 |
ctctatgtggatgtgcatatatgtctttcttggtaccttcttctatcatcatcttatcttaacttgaattaatttagttttataaggaggtaaaagtttg |
39026072 |
T |
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| Q |
414 |
acatagcacatgattaagagcacattcatggaatttg |
450 |
Q |
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| T |
39026071 |
acatagcacatgattaagagcacattcatggaatttg |
39026035 |
T |
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Back To:
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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 30722839 - 30722757
Alignment:
| Q |
222 |
tatgctcccatgtgaattgtttgcatgcactatat--gctttctttgctttgtccccaaaccattcccacatgtagggtatat |
302 |
Q |
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| T |
30722839 |
tatgcgcccatgtgaattgattgcatgcactatgctagctttctttgctttgtccacaaaccattgccacatgttgggtatat |
30722757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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