View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10108_low_6 (Length: 460)
Name: NF10108_low_6
Description: NF10108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10108_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 27054047 - 27054480
Alignment:
| Q |
19 |
ggtttttctgctcaggagctgtgaatcaggaagtctgaatgcaaccttagctaaaggaaaagcaattttgtgtttccagcctcggtcacagaggtcggca |
118 |
Q |
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| T |
27054047 |
ggtttttctgctcaggagctgtgaatcaggaagtctgaatgcaaccttagctaaaggaaaagcaattttgtgtttccagcctcggtcacagaggtcggca |
27054146 |
T |
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| Q |
119 |
acggctgctgtaagaactgtaatggaagttgaaggtgttggtctcatatatgctcagtttcctactaatgatgttgatatgtgttggggtataccctctg |
218 |
Q |
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| T |
27054147 |
acggctgctgtaagaactgtaatggaagttgaaggtgttggtctcatatatgctcagtttcctactaatgatgttgatatgtgttggggtataccctctg |
27054246 |
T |
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| Q |
219 |
tccaagttgatttcacagcaggaactaaaattctatcatacatggaagctactaggtaacaagtactttgaaaaagcaacgtctaattttccttgttctt |
318 |
Q |
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| T |
27054247 |
tccaagttgatttcacagcaggaactaaaattctatcatacatggaagctactaggtaacaagtactttgaaaaagcaacgtctaattttccttgttctt |
27054346 |
T |
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| Q |
319 |
agtctacaaaatattgaataattcagttttatttttatgatattcttgcttgttataggaatcctgtaatcaagtttagcaagaccagaacagttgtggg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27054347 |
agtctacaaaatattgaataattcagttttatttttatgatattcttgcttgttataggaatcctgtaatcaagtttagcaagaccagaacagttgtggg |
27054446 |
T |
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| Q |
419 |
acaacagatgtcccccgatgtggcattcttctct |
452 |
Q |
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| T |
27054447 |
acaacagatgtcccccgatgtggcattattctct |
27054480 |
T |
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