View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10109_high_3 (Length: 250)
Name: NF10109_high_3
Description: NF10109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10109_high_3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 41932618 - 41932382
Alignment:
| Q |
14 |
agacagcatctttgagatcatcgagccatttgttaacagaagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41932618 |
agacagcatctttgagatcatcgagccatttgttaacagcagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagt |
41932519 |
T |
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| Q |
114 |
gttcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41932518 |
gttcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaa |
41932419 |
T |
|
| Q |
214 |
gctgacagaaatgcttcaccaacagctactgcagcca |
250 |
Q |
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| T |
41932418 |
gctgacagaaatgcttcaccaacagctactgcagcca |
41932382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 33549369 - 33549301
Alignment:
| Q |
147 |
tttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaagc |
215 |
Q |
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|||||||||||| |||||||||| ||||||| |||||| ||| |||||||||||||| |||||||||| |
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| T |
33549369 |
tttcttcccacggatcaagtcaacaacctcaagagaagtaagtatgtcaaggacaactccaatgaaagc |
33549301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 33354035 - 33354103
Alignment:
| Q |
147 |
tttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaagc |
215 |
Q |
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| T |
33354035 |
tttcttcccacggatcaagtcaacaacctcaagagaagtgagtatgtcaaggacaactccaatgaaagc |
33354103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 4315304 - 4315525
Alignment:
| Q |
16 |
acagcatctttgagatcatcgagccatttgttaacagaagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagtgt |
115 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |
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| T |
4315304 |
acagcatctttgagatcatcaagccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaagagtgt |
4315403 |
T |
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| Q |
116 |
tcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaagc |
215 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
4315404 |
tcttcaacctttggatcaaattgacggcaactttcttcccacggatcaagtcaacaacctcaggagaagaaagcttgtcaaggacaacttcaatgaaagc |
4315503 |
T |
|
| Q |
216 |
tgacagaaatgcttcaccaaca |
237 |
Q |
| |
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|||| ||| |||||||||||| |
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| T |
4315504 |
agacaaaaaagcttcaccaaca |
4315525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 4306442 - 4306659
Alignment:
| Q |
16 |
acagcatctttgagatcatcgagccatttgttaacagaagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagtgt |
115 |
Q |
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|||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
4306442 |
acagcatctttgagatcatcaagccatttgataacagcagagtctttgagctgtttctgttcagcatcgttcaacacagcttcaacagcataaagagtgt |
4306541 |
T |
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| Q |
116 |
tcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaagc |
215 |
Q |
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||||||||||||| | ||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4306542 |
tcttcaacctttgaaccaagttgacgtcaactttcttcccacggatcaagtcaacaacctcaggagaagcaagcctgtcgaggacaacttcaatgaaagc |
4306641 |
T |
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| Q |
216 |
tgacagaaatgcttcacc |
233 |
Q |
| |
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|||||||||| |||||| |
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| T |
4306642 |
ggacagaaatgattcacc |
4306659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 4253198 - 4252973
Alignment:
| Q |
14 |
agacagcatctttgagatcatcgagccatttgttaacagaagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagt |
113 |
Q |
| |
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||||| || ||||||||||||||| |||| |||||| || || || |||||||||||| || || ||||| || || |||||||| |||||||||||||| |
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| T |
4253198 |
agacaacacctttgagatcatcgatccatctgttaatagcagggtttttgaactgtttttgctccgcatcgttaaacacagcttccacagcataaagagt |
4253099 |
T |
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| Q |
114 |
gttcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaa |
213 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
4253098 |
gttcttcaacctttggaccaaattgacgtcaactttcttcccacggatcaagacaacaacctcaggagaagcgagcctgtcgaggacaacttcaatgaaa |
4252999 |
T |
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| Q |
214 |
gctgacagaaatgcttcaccaacagc |
239 |
Q |
| |
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|| ||||||||||||||||| ||||| |
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| T |
4252998 |
gcagacagaaatgcttcacctacagc |
4252973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 4309318 - 4309554
Alignment:
| Q |
14 |
agacagcatctttgagatcatcgagccatttgttaacagaagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagt |
113 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| || ||||||||||||||||||||| || ||||||||| |||||||| |||||||||||||| |
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| T |
4309318 |
agacagcgtctttgagatcatcgagccatttcttaatagcagagtctttgaactgtttctgctccacatcattcagcacagcttccacagcataaagagt |
4309417 |
T |
|
| Q |
114 |
gttcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaacttcaatgaaa |
213 |
Q |
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||| ||||||||||| | |||||||| || |||||| |||||| | || ||||||| ||||| ||||||||| ||||||||||||||||||||||| || |
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| T |
4309418 |
gttattcaacctttgaaccaaattgatgtaaacttttttcccatggatgaagtcaagaacctgaggagaagccagcctgtcaaggacaacttcaattaat |
4309517 |
T |
|
| Q |
214 |
gctgacagaaatgcttcaccaacagctactgcagcca |
250 |
Q |
| |
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|| ||||| ||||||||||||||| | ||||||| |
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| T |
4309518 |
aaagatagaaaagcttcaccaacagctgcagcagcca |
4309554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 4246070 - 4245988
Alignment:
| Q |
18 |
agcatctttgagatcatcgagccatttgttaacagaagagtctttgaactgtttctgttcagcatcattcaagacagcttcaa |
100 |
Q |
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|||||||||||| ||||| | | | |||||||||| ||||||||||| |||||||||||||||||||| | ||||||||||| |
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| T |
4246070 |
agcatctttgaggtcatcaaactagttgttaacagcagagtctttgagttgtttctgttcagcatcattaaggacagcttcaa |
4245988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 184
Target Start/End: Original strand, 34803320 - 34803488
Alignment:
| Q |
16 |
acagcatctttgagatcatcgagccatttgttaacagaagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaagagtgt |
115 |
Q |
| |
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||||| |||||||| ||||||||||| |||||||||| ||||||||||| |||||||| ||| ||||||| | |||||||| || ||||| |||| | |
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| T |
34803320 |
acagcgtctttgaggtcatcgagccagttgttaacagcagagtctttgatctgtttctattccgcatcataaagaacagcttctactgcatatggagtat |
34803419 |
T |
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| Q |
116 |
tcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaag |
184 |
Q |
| |
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||||||||| ||| | ||||||||| ||||| | ||||||||| ||||| |||| || || |||||||| |
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| T |
34803420 |
tcttcaaccgttgtaccaaattgacatcaacctgcttcccacggatcaattcaagaatctgaggagaag |
34803488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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